Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3439 and EX28DRAFT_3440 are separated by 129 nucleotides EX28DRAFT_3440 and EX28DRAFT_3441 are separated by 178 nucleotides EX28DRAFT_3441 and EX28DRAFT_3442 are separated by 98 nucleotides
EX28DRAFT_3439: EX28DRAFT_3439 - PTS system, trehalose-specific IIBC component, at 109,769 to 111,187
_3439
EX28DRAFT_3440: EX28DRAFT_3440 - trehalose operon repressor, proteobacterial, at 111,317 to 112,264
_3440
EX28DRAFT_3441: EX28DRAFT_3441 - RNA, at 112,443 to 112,553
_3441
EX28DRAFT_3442: EX28DRAFT_3442 - magnesium-translocating P-type ATPase, at 112,652 to 115,360
_3442
Position (kb) 111
112
113 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 110.418 kb on + strand, within EX28DRAFT_3439 at 110.419 kb on - strand, within EX28DRAFT_3439 at 110.528 kb on - strand, within EX28DRAFT_3439 at 110.570 kb on + strand, within EX28DRAFT_3439 at 110.571 kb on - strand, within EX28DRAFT_3439 at 110.571 kb on - strand, within EX28DRAFT_3439 at 110.683 kb on - strand, within EX28DRAFT_3439 at 110.722 kb on - strand, within EX28DRAFT_3439 at 110.761 kb on + strand, within EX28DRAFT_3439 at 110.762 kb on - strand, within EX28DRAFT_3439 at 110.810 kb on + strand, within EX28DRAFT_3439 at 110.890 kb on + strand, within EX28DRAFT_3439 at 110.967 kb on + strand, within EX28DRAFT_3439 at 111.220 kb on + strand at 111.221 kb on - strand at 111.221 kb on - strand at 111.221 kb on - strand at 111.240 kb on + strand at 111.318 kb on + strand at 111.319 kb on - strand at 111.337 kb on + strand at 111.342 kb on - strand at 111.928 kb on + strand, within EX28DRAFT_3440 at 111.987 kb on + strand, within EX28DRAFT_3440 at 112.250 kb on - strand at 112.269 kb on + strand at 112.270 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.293 kb on - strand at 112.312 kb on + strand at 112.312 kb on + strand at 112.313 kb on - strand at 112.315 kb on - strand at 112.371 kb on + strand at 112.372 kb on - strand at 112.373 kb on + strand at 112.373 kb on + strand at 112.374 kb on - strand at 112.406 kb on + strand at 112.407 kb on - strand at 112.407 kb on - strand at 112.416 kb on + strand at 112.434 kb on + strand at 112.442 kb on - strand at 112.651 kb on + strand at 112.652 kb on - strand at 112.652 kb on - strand at 112.652 kb on - strand at 112.854 kb on + strand at 112.935 kb on + strand, within EX28DRAFT_3442 at 113.001 kb on - strand, within EX28DRAFT_3442 at 113.152 kb on + strand, within EX28DRAFT_3442 at 113.253 kb on + strand, within EX28DRAFT_3442 at 113.254 kb on - strand, within EX28DRAFT_3442
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 110,418 + EX28DRAFT_3439 0.46 -0.2 110,419 - EX28DRAFT_3439 0.46 +0.6 110,528 - EX28DRAFT_3439 0.53 -0.2 110,570 + EX28DRAFT_3439 0.56 -0.2 110,571 - EX28DRAFT_3439 0.57 +0.2 110,571 - EX28DRAFT_3439 0.57 +0.3 110,683 - EX28DRAFT_3439 0.64 -0.7 110,722 - EX28DRAFT_3439 0.67 +1.8 110,761 + EX28DRAFT_3439 0.70 +1.3 110,762 - EX28DRAFT_3439 0.70 -1.9 110,810 + EX28DRAFT_3439 0.73 +2.2 110,890 + EX28DRAFT_3439 0.79 -1.2 110,967 + EX28DRAFT_3439 0.84 +0.7 111,220 + +0.3 111,221 - +0.6 111,221 - -0.3 111,221 - +0.0 111,240 + -0.7 111,318 + -0.4 111,319 - -0.4 111,337 + -2.2 111,342 - -3.9 111,928 + EX28DRAFT_3440 0.64 -2.4 111,987 + EX28DRAFT_3440 0.71 -1.6 112,250 - -1.0 112,269 + +0.1 112,270 - -0.9 112,293 - +0.2 112,293 - +0.1 112,293 - -1.2 112,293 - +0.4 112,312 + +0.1 112,312 + +0.2 112,313 - +1.0 112,315 - -0.7 112,371 + +0.1 112,372 - -0.2 112,373 + +1.1 112,373 + +0.7 112,374 - +0.2 112,406 + -0.3 112,407 - -1.0 112,407 - -0.3 112,416 + -0.9 112,434 + +1.2 112,442 - -0.4 112,651 + -0.2 112,652 - -0.1 112,652 - -1.8 112,652 - +1.2 112,854 + -0.3 112,935 + EX28DRAFT_3442 0.10 +0.3 113,001 - EX28DRAFT_3442 0.13 +0.5 113,152 + EX28DRAFT_3442 0.18 -0.5 113,253 + EX28DRAFT_3442 0.22 -0.5 113,254 - EX28DRAFT_3442 0.22 +0.2
Or see this region's nucleotide sequence