Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3336

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEX28DRAFT_3335 and EX28DRAFT_3336 are separated by 115 nucleotidesEX28DRAFT_3336 and EX28DRAFT_3337 are separated by 308 nucleotidesEX28DRAFT_3337 and EX28DRAFT_3338 are separated by 24 nucleotides EX28DRAFT_3335: EX28DRAFT_3335 - anaerobic c4-dicarboxylate membrane transporter family protein, at 5,065 to 6,366 _3335 EX28DRAFT_3336: EX28DRAFT_3336 - aspartate ammonia-lyase, at 6,482 to 7,918 _3336 EX28DRAFT_3337: EX28DRAFT_3337 - Protein affecting phage T7 exclusion by the F plasmid, at 8,227 to 8,718 _3337 EX28DRAFT_3338: EX28DRAFT_3338 - Amino acid transporters, at 8,743 to 9,993 _3338 Position (kb) 6 7 8Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 5.649 kb on - strand, within EX28DRAFT_3335at 5.873 kb on + strand, within EX28DRAFT_3335at 5.874 kb on - strand, within EX28DRAFT_3335at 6.103 kb on - strand, within EX28DRAFT_3335at 6.107 kb on + strand, within EX28DRAFT_3335at 6.107 kb on + strand, within EX28DRAFT_3335at 6.130 kb on - strand, within EX28DRAFT_3335at 6.153 kb on - strand, within EX28DRAFT_3335at 6.195 kb on + strand, within EX28DRAFT_3335at 6.195 kb on + strand, within EX28DRAFT_3335at 6.255 kb on + strandat 6.262 kb on - strandat 6.386 kb on + strandat 6.462 kb on - strandat 6.502 kb on + strandat 6.503 kb on - strandat 6.504 kb on + strandat 6.518 kb on - strandat 6.518 kb on - strandat 6.519 kb on + strandat 6.519 kb on + strandat 6.520 kb on - strandat 6.520 kb on - strandat 6.553 kb on + strandat 6.605 kb on + strandat 6.678 kb on + strand, within EX28DRAFT_3336at 6.700 kb on + strand, within EX28DRAFT_3336at 6.702 kb on + strand, within EX28DRAFT_3336at 6.703 kb on - strand, within EX28DRAFT_3336at 6.703 kb on - strand, within EX28DRAFT_3336at 6.708 kb on + strand, within EX28DRAFT_3336at 6.708 kb on + strand, within EX28DRAFT_3336at 6.709 kb on - strand, within EX28DRAFT_3336at 6.709 kb on - strand, within EX28DRAFT_3336at 6.709 kb on - strand, within EX28DRAFT_3336at 6.878 kb on - strand, within EX28DRAFT_3336at 6.878 kb on - strand, within EX28DRAFT_3336at 7.079 kb on + strand, within EX28DRAFT_3336at 7.292 kb on + strand, within EX28DRAFT_3336at 7.292 kb on + strand, within EX28DRAFT_3336at 7.293 kb on - strand, within EX28DRAFT_3336at 7.293 kb on - strand, within EX28DRAFT_3336at 7.449 kb on + strand, within EX28DRAFT_3336at 7.449 kb on + strand, within EX28DRAFT_3336at 7.449 kb on + strand, within EX28DRAFT_3336at 7.450 kb on - strand, within EX28DRAFT_3336at 7.450 kb on - strand, within EX28DRAFT_3336at 7.527 kb on + strand, within EX28DRAFT_3336at 7.580 kb on + strand, within EX28DRAFT_3336at 7.591 kb on + strand, within EX28DRAFT_3336at 7.592 kb on - strand, within EX28DRAFT_3336at 7.627 kb on - strand, within EX28DRAFT_3336at 7.816 kb on - strandat 7.851 kb on + strandat 7.851 kb on + strandat 7.851 kb on + strandat 7.852 kb on - strandat 7.855 kb on - strandat 7.900 kb on + strandat 7.952 kb on - strandat 7.966 kb on - strandat 7.970 kb on - strandat 7.970 kb on - strandat 8.033 kb on + strandat 8.093 kb on + strandat 8.097 kb on + strandat 8.098 kb on - strandat 8.098 kb on - strandat 8.098 kb on - strandat 8.098 kb on - strandat 8.397 kb on + strand, within EX28DRAFT_3337at 8.423 kb on + strand, within EX28DRAFT_3337at 8.665 kb on + strand, within EX28DRAFT_3337at 8.674 kb on - strandat 8.697 kb on - strandat 8.813 kb on + strandat 8.884 kb on - strand, within EX28DRAFT_3338at 8.884 kb on - strand, within EX28DRAFT_3338at 8.885 kb on + strand, within EX28DRAFT_3338

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
remove
5,649 - EX28DRAFT_3335 0.45 +0.3
5,873 + EX28DRAFT_3335 0.62 +0.3
5,874 - EX28DRAFT_3335 0.62 -0.4
6,103 - EX28DRAFT_3335 0.80 +0.2
6,107 + EX28DRAFT_3335 0.80 +1.0
6,107 + EX28DRAFT_3335 0.80 +0.2
6,130 - EX28DRAFT_3335 0.82 -0.8
6,153 - EX28DRAFT_3335 0.84 -0.1
6,195 + EX28DRAFT_3335 0.87 -1.2
6,195 + EX28DRAFT_3335 0.87 +0.3
6,255 + -0.2
6,262 - -0.8
6,386 + -0.2
6,462 - -1.4
6,502 + -1.0
6,503 - -0.5
6,504 + -2.2
6,518 - -1.0
6,518 - -1.0
6,519 + -3.0
6,519 + +1.8
6,520 - -1.2
6,520 - -1.1
6,553 + -4.0
6,605 + -1.7
6,678 + EX28DRAFT_3336 0.14 -1.7
6,700 + EX28DRAFT_3336 0.15 -2.6
6,702 + EX28DRAFT_3336 0.15 -4.2
6,703 - EX28DRAFT_3336 0.15 -2.5
6,703 - EX28DRAFT_3336 0.15 -2.5
6,708 + EX28DRAFT_3336 0.16 -2.1
6,708 + EX28DRAFT_3336 0.16 -2.5
6,709 - EX28DRAFT_3336 0.16 -4.1
6,709 - EX28DRAFT_3336 0.16 -0.8
6,709 - EX28DRAFT_3336 0.16 -0.9
6,878 - EX28DRAFT_3336 0.28 -2.2
6,878 - EX28DRAFT_3336 0.28 -1.3
7,079 + EX28DRAFT_3336 0.42 -3.0
7,292 + EX28DRAFT_3336 0.56 -1.4
7,292 + EX28DRAFT_3336 0.56 -2.2
7,293 - EX28DRAFT_3336 0.56 -2.2
7,293 - EX28DRAFT_3336 0.56 -2.0
7,449 + EX28DRAFT_3336 0.67 -1.8
7,449 + EX28DRAFT_3336 0.67 +0.7
7,449 + EX28DRAFT_3336 0.67 -2.4
7,450 - EX28DRAFT_3336 0.67 -2.0
7,450 - EX28DRAFT_3336 0.67 -1.2
7,527 + EX28DRAFT_3336 0.73 -2.9
7,580 + EX28DRAFT_3336 0.76 -1.2
7,591 + EX28DRAFT_3336 0.77 -2.6
7,592 - EX28DRAFT_3336 0.77 -0.8
7,627 - EX28DRAFT_3336 0.80 -1.4
7,816 - +0.8
7,851 + -2.8
7,851 + -2.1
7,851 + -2.5
7,852 - -1.8
7,855 - -2.8
7,900 + -2.7
7,952 - -0.6
7,966 - +0.3
7,970 - +0.2
7,970 - -0.2
8,033 + -1.1
8,093 + -0.2
8,097 + -2.1
8,098 - +2.8
8,098 - -0.6
8,098 - -1.9
8,098 - +0.2
8,397 + EX28DRAFT_3337 0.35 +0.9
8,423 + EX28DRAFT_3337 0.40 -0.5
8,665 + EX28DRAFT_3337 0.89 -0.3
8,674 - -1.4
8,697 - -0.6
8,813 + -0.8
8,884 - EX28DRAFT_3338 0.11 +0.3
8,884 - EX28DRAFT_3338 0.11 -0.2
8,885 + EX28DRAFT_3338 0.11 -1.0

Or see this region's nucleotide sequence