Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3308 and EX28DRAFT_3309 are separated by 108 nucleotides EX28DRAFT_3309 and EX28DRAFT_3310 overlap by 11 nucleotides EX28DRAFT_3310 and EX28DRAFT_3311 are separated by 11 nucleotides
EX28DRAFT_3308: EX28DRAFT_3308 - acetyl-CoA carboxylase, biotin carboxylase subunit, at 608,116 to 609,465
_3308
EX28DRAFT_3309: EX28DRAFT_3309 - Predicted membrane protein, at 609,574 to 609,816
_3309
EX28DRAFT_3310: EX28DRAFT_3310 - sodium/pantothenate symporter, at 609,806 to 611,257
_3310
EX28DRAFT_3311: EX28DRAFT_3311 - ribosomal protein L11 methyltransferase, at 611,269 to 612,150
_3311
Position (kb) 609
610
611
612 Strain fitness (log2 ratio) -2
-1
0
1
2 at 609.507 kb on + strand at 609.537 kb on + strand at 609.537 kb on + strand at 609.637 kb on + strand, within EX28DRAFT_3309 at 609.638 kb on - strand, within EX28DRAFT_3309 at 609.778 kb on + strand, within EX28DRAFT_3309 at 609.840 kb on - strand at 609.971 kb on + strand, within EX28DRAFT_3310 at 610.016 kb on - strand, within EX28DRAFT_3310 at 610.118 kb on + strand, within EX28DRAFT_3310 at 610.120 kb on + strand, within EX28DRAFT_3310 at 610.142 kb on - strand, within EX28DRAFT_3310 at 610.191 kb on + strand, within EX28DRAFT_3310 at 610.191 kb on + strand, within EX28DRAFT_3310 at 610.319 kb on + strand, within EX28DRAFT_3310 at 610.320 kb on - strand, within EX28DRAFT_3310 at 610.519 kb on + strand, within EX28DRAFT_3310 at 610.585 kb on + strand, within EX28DRAFT_3310 at 610.585 kb on + strand, within EX28DRAFT_3310 at 610.624 kb on + strand, within EX28DRAFT_3310 at 610.625 kb on - strand, within EX28DRAFT_3310 at 610.663 kb on + strand, within EX28DRAFT_3310 at 610.696 kb on + strand, within EX28DRAFT_3310 at 610.696 kb on + strand, within EX28DRAFT_3310 at 610.697 kb on - strand, within EX28DRAFT_3310 at 610.697 kb on - strand, within EX28DRAFT_3310 at 610.750 kb on - strand, within EX28DRAFT_3310 at 610.802 kb on - strand, within EX28DRAFT_3310 at 610.924 kb on + strand, within EX28DRAFT_3310 at 610.925 kb on - strand, within EX28DRAFT_3310 at 611.256 kb on - strand at 611.464 kb on - strand, within EX28DRAFT_3311 at 612.192 kb on + strand at 612.192 kb on + strand at 612.251 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 609,507 + -0.7 609,537 + +0.2 609,537 + +0.4 609,637 + EX28DRAFT_3309 0.26 -1.0 609,638 - EX28DRAFT_3309 0.26 -0.8 609,778 + EX28DRAFT_3309 0.84 -1.5 609,840 - -1.1 609,971 + EX28DRAFT_3310 0.11 -1.3 610,016 - EX28DRAFT_3310 0.14 -0.4 610,118 + EX28DRAFT_3310 0.21 -1.2 610,120 + EX28DRAFT_3310 0.22 -1.1 610,142 - EX28DRAFT_3310 0.23 -1.3 610,191 + EX28DRAFT_3310 0.27 -0.8 610,191 + EX28DRAFT_3310 0.27 -1.5 610,319 + EX28DRAFT_3310 0.35 -1.5 610,320 - EX28DRAFT_3310 0.35 +0.6 610,519 + EX28DRAFT_3310 0.49 -2.6 610,585 + EX28DRAFT_3310 0.54 -2.7 610,585 + EX28DRAFT_3310 0.54 -0.5 610,624 + EX28DRAFT_3310 0.56 -1.7 610,625 - EX28DRAFT_3310 0.56 -2.3 610,663 + EX28DRAFT_3310 0.59 -1.2 610,696 + EX28DRAFT_3310 0.61 +0.1 610,696 + EX28DRAFT_3310 0.61 -0.5 610,697 - EX28DRAFT_3310 0.61 +2.1 610,697 - EX28DRAFT_3310 0.61 +0.1 610,750 - EX28DRAFT_3310 0.65 +0.2 610,802 - EX28DRAFT_3310 0.69 +0.4 610,924 + EX28DRAFT_3310 0.77 -0.0 610,925 - EX28DRAFT_3310 0.77 -1.1 611,256 - +0.3 611,464 - EX28DRAFT_3311 0.22 +0.4 612,192 + -0.6 612,192 + -1.1 612,251 + -2.4
Or see this region's nucleotide sequence