Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_3193

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_3192 and EX28DRAFT_3193 are separated by 12 nucleotidesEX28DRAFT_3193 and EX28DRAFT_3194 are separated by 20 nucleotides EX28DRAFT_3192: EX28DRAFT_3192 - putative sugar isomerase, AgaS family, at 492,389 to 493,537 _3192 EX28DRAFT_3193: EX28DRAFT_3193 - class II aldolase, tagatose bisphosphate family, at 493,550 to 494,422 _3193 EX28DRAFT_3194: EX28DRAFT_3194 - hypothetical protein, at 494,443 to 496,332 _3194 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2at 492.675 kb on - strand, within EX28DRAFT_3192at 492.782 kb on + strand, within EX28DRAFT_3192at 492.796 kb on + strand, within EX28DRAFT_3192at 492.796 kb on + strand, within EX28DRAFT_3192at 492.821 kb on + strand, within EX28DRAFT_3192at 493.067 kb on + strand, within EX28DRAFT_3192at 493.067 kb on + strand, within EX28DRAFT_3192at 493.155 kb on - strand, within EX28DRAFT_3192at 493.226 kb on - strand, within EX28DRAFT_3192at 493.243 kb on + strand, within EX28DRAFT_3192at 493.244 kb on - strand, within EX28DRAFT_3192at 493.253 kb on + strand, within EX28DRAFT_3192at 493.415 kb on + strand, within EX28DRAFT_3192at 493.416 kb on - strand, within EX28DRAFT_3192at 493.416 kb on - strand, within EX28DRAFT_3192at 493.452 kb on + strandat 493.459 kb on + strandat 493.535 kb on + strandat 493.549 kb on + strandat 493.550 kb on - strandat 493.550 kb on - strandat 493.555 kb on + strandat 493.555 kb on + strandat 493.555 kb on + strandat 493.556 kb on - strandat 493.558 kb on + strandat 493.558 kb on + strandat 493.559 kb on - strandat 493.571 kb on + strandat 493.572 kb on - strandat 493.572 kb on - strandat 493.712 kb on - strand, within EX28DRAFT_3193at 493.718 kb on - strand, within EX28DRAFT_3193at 493.718 kb on - strand, within EX28DRAFT_3193at 493.736 kb on + strand, within EX28DRAFT_3193at 493.736 kb on + strand, within EX28DRAFT_3193at 493.736 kb on + strand, within EX28DRAFT_3193at 494.099 kb on - strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.324 kb on + strand, within EX28DRAFT_3193at 494.325 kb on - strand, within EX28DRAFT_3193at 494.325 kb on - strand, within EX28DRAFT_3193at 494.325 kb on - strand, within EX28DRAFT_3193at 494.436 kb on + strandat 494.436 kb on + strandat 494.529 kb on + strandat 494.530 kb on - strandat 494.587 kb on - strandat 494.729 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.761 kb on + strand, within EX28DRAFT_3194at 494.762 kb on - strand, within EX28DRAFT_3194at 494.777 kb on - strand, within EX28DRAFT_3194at 494.821 kb on - strand, within EX28DRAFT_3194at 494.857 kb on + strand, within EX28DRAFT_3194at 494.858 kb on - strand, within EX28DRAFT_3194at 494.858 kb on - strand, within EX28DRAFT_3194at 494.862 kb on - strand, within EX28DRAFT_3194at 494.938 kb on + strand, within EX28DRAFT_3194at 494.938 kb on + strand, within EX28DRAFT_3194at 494.938 kb on + strand, within EX28DRAFT_3194at 494.939 kb on - strand, within EX28DRAFT_3194at 494.939 kb on - strand, within EX28DRAFT_3194at 494.939 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 494.970 kb on - strand, within EX28DRAFT_3194at 495.012 kb on + strand, within EX28DRAFT_3194at 495.099 kb on + strand, within EX28DRAFT_3194at 495.099 kb on + strand, within EX28DRAFT_3194at 495.100 kb on - strand, within EX28DRAFT_3194at 495.100 kb on - strand, within EX28DRAFT_3194at 495.106 kb on + strand, within EX28DRAFT_3194at 495.106 kb on + strand, within EX28DRAFT_3194at 495.110 kb on + strand, within EX28DRAFT_3194at 495.111 kb on - strand, within EX28DRAFT_3194at 495.193 kb on - strand, within EX28DRAFT_3194at 495.373 kb on + strand, within EX28DRAFT_3194at 495.375 kb on + strand, within EX28DRAFT_3194at 495.376 kb on - strand, within EX28DRAFT_3194

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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492,675 - EX28DRAFT_3192 0.25 +0.7
492,782 + EX28DRAFT_3192 0.34 -1.5
492,796 + EX28DRAFT_3192 0.35 -0.1
492,796 + EX28DRAFT_3192 0.35 -0.0
492,821 + EX28DRAFT_3192 0.38 -1.3
493,067 + EX28DRAFT_3192 0.59 +0.4
493,067 + EX28DRAFT_3192 0.59 -1.4
493,155 - EX28DRAFT_3192 0.67 -0.3
493,226 - EX28DRAFT_3192 0.73 -0.7
493,243 + EX28DRAFT_3192 0.74 -0.6
493,244 - EX28DRAFT_3192 0.74 +0.2
493,253 + EX28DRAFT_3192 0.75 -0.2
493,415 + EX28DRAFT_3192 0.89 +0.6
493,416 - EX28DRAFT_3192 0.89 +0.5
493,416 - EX28DRAFT_3192 0.89 -1.7
493,452 + -0.3
493,459 + -0.1
493,535 + -0.7
493,549 + -0.8
493,550 - -0.2
493,550 - +0.1
493,555 + -1.1
493,555 + +0.0
493,555 + +0.3
493,556 - +0.5
493,558 + +0.4
493,558 + +0.7
493,559 - -0.7
493,571 + -0.9
493,572 - -0.8
493,572 - +0.6
493,712 - EX28DRAFT_3193 0.19 +1.9
493,718 - EX28DRAFT_3193 0.19 -2.7
493,718 - EX28DRAFT_3193 0.19 -0.3
493,736 + EX28DRAFT_3193 0.21 +0.5
493,736 + EX28DRAFT_3193 0.21 -0.0
493,736 + EX28DRAFT_3193 0.21 +0.7
494,099 - EX28DRAFT_3193 0.63 +2.1
494,324 + EX28DRAFT_3193 0.89 -1.5
494,324 + EX28DRAFT_3193 0.89 +1.3
494,324 + EX28DRAFT_3193 0.89 -0.0
494,324 + EX28DRAFT_3193 0.89 +0.2
494,324 + EX28DRAFT_3193 0.89 +0.6
494,325 - EX28DRAFT_3193 0.89 +0.2
494,325 - EX28DRAFT_3193 0.89 -1.2
494,325 - EX28DRAFT_3193 0.89 -0.6
494,436 + -0.2
494,436 + -0.8
494,529 + -0.2
494,530 - -0.4
494,587 - -1.9
494,729 + EX28DRAFT_3194 0.15 -0.2
494,761 + EX28DRAFT_3194 0.17 +0.6
494,761 + EX28DRAFT_3194 0.17 -0.1
494,761 + EX28DRAFT_3194 0.17 +0.8
494,761 + EX28DRAFT_3194 0.17 +0.6
494,762 - EX28DRAFT_3194 0.17 +0.1
494,777 - EX28DRAFT_3194 0.18 +0.7
494,821 - EX28DRAFT_3194 0.20 +0.3
494,857 + EX28DRAFT_3194 0.22 -0.0
494,858 - EX28DRAFT_3194 0.22 -2.2
494,858 - EX28DRAFT_3194 0.22 -0.2
494,862 - EX28DRAFT_3194 0.22 +0.3
494,938 + EX28DRAFT_3194 0.26 -0.7
494,938 + EX28DRAFT_3194 0.26 +0.6
494,938 + EX28DRAFT_3194 0.26 +1.3
494,939 - EX28DRAFT_3194 0.26 +0.2
494,939 - EX28DRAFT_3194 0.26 -0.5
494,939 - EX28DRAFT_3194 0.26 -0.3
494,970 - EX28DRAFT_3194 0.28 +0.3
494,970 - EX28DRAFT_3194 0.28 -0.0
494,970 - EX28DRAFT_3194 0.28 -0.3
494,970 - EX28DRAFT_3194 0.28 +0.9
495,012 + EX28DRAFT_3194 0.30 +0.6
495,099 + EX28DRAFT_3194 0.35 -1.9
495,099 + EX28DRAFT_3194 0.35 -1.7
495,100 - EX28DRAFT_3194 0.35 +0.9
495,100 - EX28DRAFT_3194 0.35 +1.5
495,106 + EX28DRAFT_3194 0.35 +0.7
495,106 + EX28DRAFT_3194 0.35 -0.6
495,110 + EX28DRAFT_3194 0.35 -0.2
495,111 - EX28DRAFT_3194 0.35 -0.2
495,193 - EX28DRAFT_3194 0.40 -1.8
495,373 + EX28DRAFT_3194 0.49 -0.2
495,375 + EX28DRAFT_3194 0.49 +0.6
495,376 - EX28DRAFT_3194 0.49 -0.0

Or see this region's nucleotide sequence