Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3161 and EX28DRAFT_3162 are separated by 115 nucleotides EX28DRAFT_3162 and EX28DRAFT_3163 are separated by 344 nucleotides
EX28DRAFT_3161: EX28DRAFT_3161 - D-galactonate transporter, at 464,638 to 465,936
_3161
EX28DRAFT_3162: EX28DRAFT_3162 - Transcriptional regulators, at 466,052 to 466,828
_3162
EX28DRAFT_3163: EX28DRAFT_3163 - Uncharacterized membrane-associated protein, at 467,173 to 467,835
_3163
Position (kb) 466
467 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 465.084 kb on - strand, within EX28DRAFT_3161 at 465.238 kb on + strand, within EX28DRAFT_3161 at 465.238 kb on + strand, within EX28DRAFT_3161 at 465.239 kb on - strand, within EX28DRAFT_3161 at 465.477 kb on + strand, within EX28DRAFT_3161 at 465.613 kb on + strand, within EX28DRAFT_3161 at 465.613 kb on + strand, within EX28DRAFT_3161 at 465.614 kb on - strand, within EX28DRAFT_3161 at 465.759 kb on + strand, within EX28DRAFT_3161 at 465.859 kb on - strand at 465.954 kb on + strand at 466.077 kb on + strand at 466.079 kb on + strand at 466.079 kb on + strand at 466.210 kb on + strand, within EX28DRAFT_3162 at 466.210 kb on + strand, within EX28DRAFT_3162 at 466.326 kb on - strand, within EX28DRAFT_3162 at 466.373 kb on - strand, within EX28DRAFT_3162 at 466.663 kb on + strand, within EX28DRAFT_3162 at 466.827 kb on - strand at 466.890 kb on + strand at 466.890 kb on + strand at 466.891 kb on - strand at 466.891 kb on - strand at 466.892 kb on + strand at 466.892 kb on + strand at 466.892 kb on + strand at 466.893 kb on - strand at 466.893 kb on - strand at 466.893 kb on - strand at 466.894 kb on + strand at 466.894 kb on + strand at 466.894 kb on + strand at 466.895 kb on - strand at 466.909 kb on + strand at 466.909 kb on + strand at 466.909 kb on + strand at 466.910 kb on - strand at 466.910 kb on - strand at 467.046 kb on + strand at 467.192 kb on + strand at 467.192 kb on + strand at 467.193 kb on - strand at 467.193 kb on - strand at 467.257 kb on + strand, within EX28DRAFT_3163 at 467.257 kb on + strand, within EX28DRAFT_3163 at 467.258 kb on - strand, within EX28DRAFT_3163 at 467.258 kb on - strand, within EX28DRAFT_3163 at 467.271 kb on + strand, within EX28DRAFT_3163 at 467.272 kb on - strand, within EX28DRAFT_3163 at 467.390 kb on + strand, within EX28DRAFT_3163 at 467.391 kb on - strand, within EX28DRAFT_3163 at 467.391 kb on - strand, within EX28DRAFT_3163 at 467.431 kb on + strand, within EX28DRAFT_3163 at 467.431 kb on + strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.432 kb on - strand, within EX28DRAFT_3163 at 467.661 kb on - strand, within EX28DRAFT_3163 at 467.661 kb on - strand, within EX28DRAFT_3163 at 467.661 kb on - strand, within EX28DRAFT_3163 at 467.690 kb on - strand, within EX28DRAFT_3163 at 467.722 kb on + strand, within EX28DRAFT_3163 at 467.722 kb on + strand, within EX28DRAFT_3163 at 467.723 kb on - strand, within EX28DRAFT_3163
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 465,084 - EX28DRAFT_3161 0.34 -0.5 465,238 + EX28DRAFT_3161 0.46 +0.8 465,238 + EX28DRAFT_3161 0.46 -0.2 465,239 - EX28DRAFT_3161 0.46 -0.1 465,477 + EX28DRAFT_3161 0.65 +0.2 465,613 + EX28DRAFT_3161 0.75 +1.2 465,613 + EX28DRAFT_3161 0.75 -0.6 465,614 - EX28DRAFT_3161 0.75 -1.7 465,759 + EX28DRAFT_3161 0.86 +0.1 465,859 - -0.4 465,954 + +0.2 466,077 + -0.5 466,079 + -1.6 466,079 + -1.8 466,210 + EX28DRAFT_3162 0.20 -2.2 466,210 + EX28DRAFT_3162 0.20 -1.0 466,326 - EX28DRAFT_3162 0.35 -1.5 466,373 - EX28DRAFT_3162 0.41 -1.6 466,663 + EX28DRAFT_3162 0.79 -0.9 466,827 - +0.4 466,890 + +0.0 466,890 + +0.5 466,891 - -0.5 466,891 - +0.6 466,892 + +1.4 466,892 + -0.7 466,892 + -2.1 466,893 - +1.6 466,893 - +2.2 466,893 - +1.6 466,894 + -1.2 466,894 + +0.5 466,894 + +0.5 466,895 - +0.3 466,909 + +1.0 466,909 + -0.1 466,909 + -1.9 466,910 - -0.1 466,910 - -0.5 467,046 + -0.2 467,192 + -0.9 467,192 + +0.3 467,193 - -0.3 467,193 - +0.3 467,257 + EX28DRAFT_3163 0.13 -0.3 467,257 + EX28DRAFT_3163 0.13 +0.5 467,258 - EX28DRAFT_3163 0.13 +1.3 467,258 - EX28DRAFT_3163 0.13 -1.0 467,271 + EX28DRAFT_3163 0.15 +1.1 467,272 - EX28DRAFT_3163 0.15 -0.9 467,390 + EX28DRAFT_3163 0.33 +4.9 467,391 - EX28DRAFT_3163 0.33 +0.3 467,391 - EX28DRAFT_3163 0.33 +0.5 467,431 + EX28DRAFT_3163 0.39 +0.2 467,431 + EX28DRAFT_3163 0.39 +2.5 467,432 - EX28DRAFT_3163 0.39 +2.9 467,432 - EX28DRAFT_3163 0.39 +0.6 467,432 - EX28DRAFT_3163 0.39 -2.8 467,432 - EX28DRAFT_3163 0.39 +1.0 467,432 - EX28DRAFT_3163 0.39 +0.9 467,432 - EX28DRAFT_3163 0.39 -1.5 467,661 - EX28DRAFT_3163 0.74 -0.6 467,661 - EX28DRAFT_3163 0.74 +0.4 467,661 - EX28DRAFT_3163 0.74 -0.9 467,690 - EX28DRAFT_3163 0.78 +0.7 467,722 + EX28DRAFT_3163 0.83 +0.1 467,722 + EX28DRAFT_3163 0.83 +2.1 467,723 - EX28DRAFT_3163 0.83 -0.3
Or see this region's nucleotide sequence