Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3082 and EX28DRAFT_3083 are separated by 226 nucleotides EX28DRAFT_3083 and EX28DRAFT_3084 are separated by 60 nucleotides
EX28DRAFT_3082: EX28DRAFT_3082 - Uncharacterized conserved protein, at 394,203 to 395,504
_3082
EX28DRAFT_3083: EX28DRAFT_3083 - SH3 domain protein, at 395,731 to 396,354
_3083
EX28DRAFT_3084: EX28DRAFT_3084 - tRNA nucleotidyltransferase/poly(A) polymerase, at 396,415 to 397,656
_3084
Position (kb) 395
396
397 Strain fitness (log2 ratio) -2
-1
0
1 at 395.254 kb on + strand, within EX28DRAFT_3082 at 395.254 kb on + strand, within EX28DRAFT_3082 at 395.271 kb on + strand, within EX28DRAFT_3082 at 395.271 kb on + strand, within EX28DRAFT_3082 at 395.387 kb on - strand at 395.390 kb on + strand at 395.390 kb on + strand at 395.391 kb on - strand at 395.391 kb on - strand at 395.391 kb on - strand at 395.393 kb on + strand at 395.393 kb on + strand at 395.432 kb on + strand at 395.485 kb on - strand at 395.574 kb on + strand at 395.575 kb on - strand at 395.575 kb on - strand at 395.578 kb on + strand at 395.578 kb on + strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.579 kb on - strand at 395.581 kb on + strand at 395.582 kb on - strand at 395.582 kb on - strand at 395.582 kb on - strand at 395.625 kb on - strand at 395.632 kb on + strand at 395.699 kb on + strand at 395.699 kb on + strand at 395.700 kb on - strand at 395.711 kb on - strand at 395.723 kb on - strand at 395.729 kb on + strand at 395.730 kb on - strand at 395.740 kb on - strand at 395.760 kb on + strand at 395.761 kb on - strand at 395.765 kb on + strand at 395.766 kb on - strand at 395.840 kb on + strand, within EX28DRAFT_3083 at 395.845 kb on - strand, within EX28DRAFT_3083 at 395.845 kb on - strand, within EX28DRAFT_3083 at 395.860 kb on - strand, within EX28DRAFT_3083 at 396.197 kb on + strand, within EX28DRAFT_3083 at 396.255 kb on + strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.256 kb on - strand, within EX28DRAFT_3083 at 396.259 kb on + strand, within EX28DRAFT_3083 at 396.260 kb on - strand, within EX28DRAFT_3083 at 396.352 kb on + strand at 396.352 kb on + strand at 396.353 kb on - strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.375 kb on + strand at 396.376 kb on - strand at 396.376 kb on - strand at 396.376 kb on - strand at 396.379 kb on + strand at 396.380 kb on - strand at 396.380 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 395,254 + EX28DRAFT_3082 0.81 +0.2 395,254 + EX28DRAFT_3082 0.81 -0.7 395,271 + EX28DRAFT_3082 0.82 +0.5 395,271 + EX28DRAFT_3082 0.82 -0.5 395,387 - -0.6 395,390 + -0.4 395,390 + -1.2 395,391 - -2.6 395,391 - +0.0 395,391 - +0.1 395,393 + -1.2 395,393 + -0.1 395,432 + -2.2 395,485 - -1.4 395,574 + -0.4 395,575 - +0.4 395,575 - +1.6 395,578 + -0.1 395,578 + +0.3 395,579 - -0.2 395,579 - -0.4 395,579 - +1.4 395,579 - +0.0 395,581 + -0.4 395,582 - -0.1 395,582 - -0.1 395,582 - +0.5 395,625 - +0.2 395,632 + -0.7 395,699 + +0.7 395,699 + +0.5 395,700 - -0.1 395,711 - +0.7 395,723 - +1.3 395,729 + -2.1 395,730 - +0.2 395,740 - +0.4 395,760 + +0.7 395,761 - -0.1 395,765 + +0.2 395,766 - -0.5 395,840 + EX28DRAFT_3083 0.17 -1.8 395,845 - EX28DRAFT_3083 0.18 -0.4 395,845 - EX28DRAFT_3083 0.18 -0.1 395,860 - EX28DRAFT_3083 0.21 +0.8 396,197 + EX28DRAFT_3083 0.75 +0.6 396,255 + EX28DRAFT_3083 0.84 -2.0 396,256 - EX28DRAFT_3083 0.84 +0.6 396,256 - EX28DRAFT_3083 0.84 -1.0 396,256 - EX28DRAFT_3083 0.84 -0.1 396,256 - EX28DRAFT_3083 0.84 -1.6 396,259 + EX28DRAFT_3083 0.85 -0.4 396,260 - EX28DRAFT_3083 0.85 -0.1 396,352 + -0.4 396,352 + -0.5 396,353 - -0.6 396,375 + -1.6 396,375 + +0.3 396,375 + -0.1 396,375 + -1.3 396,376 - -1.7 396,376 - -1.4 396,376 - -1.6 396,379 + -0.3 396,380 - +0.2 396,380 - -0.7
Or see this region's nucleotide sequence