Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3080 and EX28DRAFT_3081 are separated by 40 nucleotides EX28DRAFT_3081 and EX28DRAFT_3082 are separated by 21 nucleotides
EX28DRAFT_3080: EX28DRAFT_3080 - rfaE bifunctional protein, domain I/rfaE bifunctional protein, domain II, at 389,855 to 391,285
_3080
EX28DRAFT_3081: EX28DRAFT_3081 - Glutamine synthetase adenylyltransferase, at 391,326 to 394,181
_3081
EX28DRAFT_3082: EX28DRAFT_3082 - Uncharacterized conserved protein, at 394,203 to 395,504
_3082
Position (kb) 391
392
393
394
395 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 391.341 kb on + strand at 391.673 kb on + strand, within EX28DRAFT_3081 at 391.805 kb on - strand, within EX28DRAFT_3081 at 392.043 kb on + strand, within EX28DRAFT_3081 at 392.043 kb on + strand, within EX28DRAFT_3081 at 392.073 kb on + strand, within EX28DRAFT_3081 at 392.073 kb on + strand, within EX28DRAFT_3081 at 392.074 kb on - strand, within EX28DRAFT_3081 at 392.090 kb on + strand, within EX28DRAFT_3081 at 392.090 kb on + strand, within EX28DRAFT_3081 at 392.090 kb on + strand, within EX28DRAFT_3081 at 392.211 kb on + strand, within EX28DRAFT_3081 at 392.211 kb on + strand, within EX28DRAFT_3081 at 392.211 kb on + strand, within EX28DRAFT_3081 at 392.248 kb on - strand, within EX28DRAFT_3081 at 392.325 kb on - strand, within EX28DRAFT_3081 at 392.384 kb on - strand, within EX28DRAFT_3081 at 392.551 kb on - strand, within EX28DRAFT_3081 at 392.563 kb on + strand, within EX28DRAFT_3081 at 392.564 kb on - strand, within EX28DRAFT_3081 at 392.570 kb on + strand, within EX28DRAFT_3081 at 392.589 kb on + strand, within EX28DRAFT_3081 at 392.769 kb on + strand, within EX28DRAFT_3081 at 392.789 kb on + strand, within EX28DRAFT_3081 at 392.790 kb on - strand, within EX28DRAFT_3081 at 392.901 kb on + strand, within EX28DRAFT_3081 at 393.026 kb on + strand, within EX28DRAFT_3081 at 393.027 kb on - strand, within EX28DRAFT_3081 at 393.064 kb on + strand, within EX28DRAFT_3081 at 393.180 kb on - strand, within EX28DRAFT_3081 at 393.180 kb on - strand, within EX28DRAFT_3081 at 393.200 kb on + strand, within EX28DRAFT_3081 at 393.290 kb on + strand, within EX28DRAFT_3081 at 393.326 kb on - strand, within EX28DRAFT_3081 at 393.326 kb on - strand, within EX28DRAFT_3081 at 393.452 kb on - strand, within EX28DRAFT_3081 at 393.452 kb on - strand, within EX28DRAFT_3081 at 393.828 kb on + strand, within EX28DRAFT_3081 at 393.855 kb on + strand, within EX28DRAFT_3081 at 394.182 kb on + strand at 394.182 kb on + strand at 394.183 kb on - strand at 394.183 kb on - strand at 394.185 kb on - strand at 394.185 kb on - strand at 394.204 kb on + strand at 394.204 kb on + strand at 394.411 kb on + strand, within EX28DRAFT_3082 at 394.411 kb on + strand, within EX28DRAFT_3082 at 394.440 kb on - strand, within EX28DRAFT_3082 at 394.600 kb on + strand, within EX28DRAFT_3082 at 394.666 kb on - strand, within EX28DRAFT_3082
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 391,341 + -0.5 391,673 + EX28DRAFT_3081 0.12 -1.4 391,805 - EX28DRAFT_3081 0.17 -0.7 392,043 + EX28DRAFT_3081 0.25 +0.5 392,043 + EX28DRAFT_3081 0.25 -1.9 392,073 + EX28DRAFT_3081 0.26 -2.3 392,073 + EX28DRAFT_3081 0.26 +0.1 392,074 - EX28DRAFT_3081 0.26 -0.4 392,090 + EX28DRAFT_3081 0.27 -0.6 392,090 + EX28DRAFT_3081 0.27 -0.3 392,090 + EX28DRAFT_3081 0.27 -0.8 392,211 + EX28DRAFT_3081 0.31 -1.1 392,211 + EX28DRAFT_3081 0.31 -1.9 392,211 + EX28DRAFT_3081 0.31 -1.2 392,248 - EX28DRAFT_3081 0.32 -3.1 392,325 - EX28DRAFT_3081 0.35 -0.4 392,384 - EX28DRAFT_3081 0.37 -0.2 392,551 - EX28DRAFT_3081 0.43 +0.1 392,563 + EX28DRAFT_3081 0.43 -1.4 392,564 - EX28DRAFT_3081 0.43 -0.3 392,570 + EX28DRAFT_3081 0.44 +0.0 392,589 + EX28DRAFT_3081 0.44 -0.7 392,769 + EX28DRAFT_3081 0.51 -1.3 392,789 + EX28DRAFT_3081 0.51 +0.1 392,790 - EX28DRAFT_3081 0.51 +1.5 392,901 + EX28DRAFT_3081 0.55 -1.0 393,026 + EX28DRAFT_3081 0.60 -1.2 393,027 - EX28DRAFT_3081 0.60 -1.1 393,064 + EX28DRAFT_3081 0.61 -0.2 393,180 - EX28DRAFT_3081 0.65 +1.9 393,180 - EX28DRAFT_3081 0.65 -0.7 393,200 + EX28DRAFT_3081 0.66 -0.8 393,290 + EX28DRAFT_3081 0.69 -0.1 393,326 - EX28DRAFT_3081 0.70 -1.0 393,326 - EX28DRAFT_3081 0.70 -0.6 393,452 - EX28DRAFT_3081 0.74 -0.4 393,452 - EX28DRAFT_3081 0.74 +0.3 393,828 + EX28DRAFT_3081 0.88 -0.1 393,855 + EX28DRAFT_3081 0.89 +0.4 394,182 + -0.2 394,182 + -0.0 394,183 - +1.2 394,183 - -0.5 394,185 - -1.0 394,185 - -0.1 394,204 + -0.6 394,204 + +1.0 394,411 + EX28DRAFT_3082 0.16 -0.3 394,411 + EX28DRAFT_3082 0.16 +1.5 394,440 - EX28DRAFT_3082 0.18 -0.2 394,600 + EX28DRAFT_3082 0.30 +0.5 394,666 - EX28DRAFT_3082 0.36 +0.3
Or see this region's nucleotide sequence