Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3055 and EX28DRAFT_3056 are separated by 118 nucleotides EX28DRAFT_3056 and EX28DRAFT_3057 are separated by 139 nucleotides EX28DRAFT_3057 and EX28DRAFT_3058 overlap by 4 nucleotides
EX28DRAFT_3055: EX28DRAFT_3055 - DNA topoisomerase IV, A subunit, proteobacterial, at 364,611 to 366,869
_3055
EX28DRAFT_3056: EX28DRAFT_3056 - TIGR00156 family protein, at 366,988 to 367,389
_3056
EX28DRAFT_3057: EX28DRAFT_3057 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 367,529 to 368,188
_3057
EX28DRAFT_3058: EX28DRAFT_3058 - Signal transduction histidine kinase, at 368,185 to 369,534
_3058
Position (kb) 366
367
368 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 366.926 kb on - strand at 366.926 kb on - strand at 366.926 kb on - strand at 366.929 kb on - strand at 366.989 kb on + strand at 367.002 kb on + strand at 367.002 kb on + strand at 367.003 kb on - strand at 367.005 kb on + strand at 367.005 kb on + strand at 367.072 kb on - strand, within EX28DRAFT_3056 at 367.124 kb on - strand, within EX28DRAFT_3056 at 367.427 kb on + strand at 367.427 kb on + strand at 367.427 kb on + strand at 367.443 kb on - strand at 367.470 kb on + strand at 367.471 kb on - strand at 367.481 kb on + strand at 367.506 kb on - strand at 367.546 kb on - strand at 367.662 kb on - strand, within EX28DRAFT_3057 at 367.820 kb on + strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.821 kb on - strand, within EX28DRAFT_3057 at 367.828 kb on + strand, within EX28DRAFT_3057 at 367.845 kb on + strand, within EX28DRAFT_3057 at 367.845 kb on + strand, within EX28DRAFT_3057 at 368.063 kb on + strand, within EX28DRAFT_3057 at 368.063 kb on + strand, within EX28DRAFT_3057 at 368.064 kb on - strand, within EX28DRAFT_3057 at 368.064 kb on - strand, within EX28DRAFT_3057 at 368.065 kb on + strand, within EX28DRAFT_3057
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 366,926 - +0.9 366,926 - -1.1 366,926 - +0.2 366,929 - -0.0 366,989 + +0.4 367,002 + +0.2 367,002 + +0.4 367,003 - +0.2 367,005 + -1.4 367,005 + -0.2 367,072 - EX28DRAFT_3056 0.21 +0.6 367,124 - EX28DRAFT_3056 0.34 +1.9 367,427 + +0.2 367,427 + +0.4 367,427 + +0.2 367,443 - -0.4 367,470 + +0.2 367,471 - -0.9 367,481 + -3.1 367,506 - +0.5 367,546 - -0.6 367,662 - EX28DRAFT_3057 0.20 +0.7 367,820 + EX28DRAFT_3057 0.44 -0.3 367,821 - EX28DRAFT_3057 0.44 -1.1 367,821 - EX28DRAFT_3057 0.44 +0.3 367,821 - EX28DRAFT_3057 0.44 -0.1 367,828 + EX28DRAFT_3057 0.45 +0.3 367,845 + EX28DRAFT_3057 0.48 -1.8 367,845 + EX28DRAFT_3057 0.48 +1.4 368,063 + EX28DRAFT_3057 0.81 +1.3 368,063 + EX28DRAFT_3057 0.81 -2.5 368,064 - EX28DRAFT_3057 0.81 -0.0 368,064 - EX28DRAFT_3057 0.81 -0.6 368,065 + EX28DRAFT_3057 0.81 -0.1
Or see this region's nucleotide sequence