Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3022 and EX28DRAFT_3023 are separated by 111 nucleotides EX28DRAFT_3023 and EX28DRAFT_3024 overlap by 4 nucleotides EX28DRAFT_3024 and EX28DRAFT_3025 overlap by 8 nucleotides
EX28DRAFT_3022: EX28DRAFT_3022 - Glutathionylspermidine synthase, at 332,425 to 334,287
_3022
EX28DRAFT_3023: EX28DRAFT_3023 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 334,399 to 335,376
_3023
EX28DRAFT_3024: EX28DRAFT_3024 - oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain, at 335,373 to 336,350
_3024
EX28DRAFT_3025: EX28DRAFT_3025 - ABC-type dipeptide/oligopeptide/nickel transport systems, permease components, at 336,343 to 337,188
_3025
Position (kb) 334
335
336 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 333.578 kb on + strand, within EX28DRAFT_3022 at 333.768 kb on - strand, within EX28DRAFT_3022 at 334.076 kb on + strand, within EX28DRAFT_3022 at 334.076 kb on + strand, within EX28DRAFT_3022 at 334.076 kb on + strand, within EX28DRAFT_3022 at 334.133 kb on + strand at 334.134 kb on - strand at 334.148 kb on + strand at 334.148 kb on + strand at 334.148 kb on + strand at 334.149 kb on - strand at 334.175 kb on + strand at 334.241 kb on - strand at 334.270 kb on + strand at 334.290 kb on - strand at 334.290 kb on - strand at 334.290 kb on - strand at 334.298 kb on + strand at 334.350 kb on - strand at 334.350 kb on - strand at 334.350 kb on - strand at 334.374 kb on - strand at 334.378 kb on + strand at 334.378 kb on + strand at 334.379 kb on - strand at 334.379 kb on - strand at 334.396 kb on + strand at 334.400 kb on + strand at 334.401 kb on - strand at 334.643 kb on + strand, within EX28DRAFT_3023 at 334.643 kb on + strand, within EX28DRAFT_3023 at 334.644 kb on - strand, within EX28DRAFT_3023 at 334.685 kb on + strand, within EX28DRAFT_3023 at 334.685 kb on + strand, within EX28DRAFT_3023 at 334.686 kb on - strand, within EX28DRAFT_3023 at 334.686 kb on - strand, within EX28DRAFT_3023 at 334.710 kb on + strand, within EX28DRAFT_3023 at 334.710 kb on + strand, within EX28DRAFT_3023 at 334.748 kb on + strand, within EX28DRAFT_3023 at 334.748 kb on + strand, within EX28DRAFT_3023 at 334.785 kb on + strand, within EX28DRAFT_3023 at 334.879 kb on - strand, within EX28DRAFT_3023 at 334.955 kb on + strand, within EX28DRAFT_3023 at 334.956 kb on - strand, within EX28DRAFT_3023 at 335.063 kb on + strand, within EX28DRAFT_3023 at 335.299 kb on - strand at 335.437 kb on + strand at 335.602 kb on + strand, within EX28DRAFT_3024 at 335.665 kb on + strand, within EX28DRAFT_3024 at 335.666 kb on - strand, within EX28DRAFT_3024 at 336.197 kb on + strand, within EX28DRAFT_3024 at 336.336 kb on + strand at 336.336 kb on + strand at 336.339 kb on + strand at 336.339 kb on + strand at 336.339 kb on + strand at 336.339 kb on + strand at 336.340 kb on - strand at 336.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 333,578 + EX28DRAFT_3022 0.62 +2.1 333,768 - EX28DRAFT_3022 0.72 -0.3 334,076 + EX28DRAFT_3022 0.89 +0.0 334,076 + EX28DRAFT_3022 0.89 -0.6 334,076 + EX28DRAFT_3022 0.89 +0.2 334,133 + -0.0 334,134 - +0.7 334,148 + -1.0 334,148 + -0.6 334,148 + +0.4 334,149 - +0.2 334,175 + +0.4 334,241 - +0.0 334,270 + -1.2 334,290 - -0.1 334,290 - -0.2 334,290 - -1.5 334,298 + +0.9 334,350 - -1.5 334,350 - +0.6 334,350 - +0.3 334,374 - -0.2 334,378 + -0.7 334,378 + -1.0 334,379 - -1.0 334,379 - +0.1 334,396 + -0.1 334,400 + +0.0 334,401 - +1.4 334,643 + EX28DRAFT_3023 0.25 +2.9 334,643 + EX28DRAFT_3023 0.25 -2.4 334,644 - EX28DRAFT_3023 0.25 +0.6 334,685 + EX28DRAFT_3023 0.29 +0.4 334,685 + EX28DRAFT_3023 0.29 -0.7 334,686 - EX28DRAFT_3023 0.29 +1.4 334,686 - EX28DRAFT_3023 0.29 +0.9 334,710 + EX28DRAFT_3023 0.32 +0.1 334,710 + EX28DRAFT_3023 0.32 +0.2 334,748 + EX28DRAFT_3023 0.36 -0.1 334,748 + EX28DRAFT_3023 0.36 -1.8 334,785 + EX28DRAFT_3023 0.39 +0.1 334,879 - EX28DRAFT_3023 0.49 +1.0 334,955 + EX28DRAFT_3023 0.57 +1.4 334,956 - EX28DRAFT_3023 0.57 +0.6 335,063 + EX28DRAFT_3023 0.68 +0.5 335,299 - -1.8 335,437 + -0.2 335,602 + EX28DRAFT_3024 0.23 +1.0 335,665 + EX28DRAFT_3024 0.30 -0.3 335,666 - EX28DRAFT_3024 0.30 +0.6 336,197 + EX28DRAFT_3024 0.84 +0.1 336,336 + -1.9 336,336 + +0.4 336,339 + +0.6 336,339 + -0.4 336,339 + -0.1 336,339 + -0.7 336,340 - -1.3 336,340 - +0.0
Or see this region's nucleotide sequence