Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2931 and EX28DRAFT_2932 are separated by 3 nucleotides EX28DRAFT_2932 and EX28DRAFT_2933 are separated by 168 nucleotides EX28DRAFT_2933 and EX28DRAFT_2934 are separated by 80 nucleotides
EX28DRAFT_2931: EX28DRAFT_2931 - Signal transduction histidine kinase regulating citrate/malate metabolism, at 240,454 to 242,091
_2931
EX28DRAFT_2932: EX28DRAFT_2932 - Response regulator of citrate/malate metabolism, at 242,095 to 242,796
_2932
EX28DRAFT_2933: EX28DRAFT_2933 - ABC-type Fe3+ transport system, periplasmic component, at 242,965 to 244,053
_2933
EX28DRAFT_2934: EX28DRAFT_2934 - ABC-type Fe3+ transport system, permease component, at 244,134 to 245,903
_2934
Position (kb) 242
243
244
245 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 241.988 kb on - strand at 241.988 kb on - strand at 242.058 kb on + strand at 242.059 kb on - strand at 242.069 kb on + strand at 242.069 kb on + strand at 242.089 kb on + strand at 242.126 kb on + strand at 242.168 kb on - strand, within EX28DRAFT_2932 at 242.170 kb on - strand, within EX28DRAFT_2932 at 242.275 kb on + strand, within EX28DRAFT_2932 at 242.276 kb on - strand, within EX28DRAFT_2932 at 242.330 kb on - strand, within EX28DRAFT_2932 at 242.411 kb on - strand, within EX28DRAFT_2932 at 242.411 kb on - strand, within EX28DRAFT_2932 at 242.419 kb on - strand, within EX28DRAFT_2932 at 242.693 kb on - strand, within EX28DRAFT_2932 at 242.701 kb on + strand, within EX28DRAFT_2932 at 242.740 kb on + strand at 242.740 kb on + strand at 242.768 kb on + strand at 242.769 kb on - strand at 242.809 kb on + strand at 242.810 kb on - strand at 242.840 kb on + strand at 242.841 kb on - strand at 242.841 kb on - strand at 242.920 kb on - strand at 242.920 kb on - strand at 242.961 kb on + strand at 242.962 kb on - strand at 243.005 kb on + strand at 243.106 kb on + strand, within EX28DRAFT_2933 at 243.211 kb on + strand, within EX28DRAFT_2933 at 243.307 kb on + strand, within EX28DRAFT_2933 at 243.322 kb on - strand, within EX28DRAFT_2933 at 243.369 kb on + strand, within EX28DRAFT_2933 at 243.389 kb on - strand, within EX28DRAFT_2933 at 243.406 kb on - strand, within EX28DRAFT_2933 at 243.409 kb on + strand, within EX28DRAFT_2933 at 243.544 kb on - strand, within EX28DRAFT_2933 at 243.544 kb on - strand, within EX28DRAFT_2933 at 243.544 kb on - strand, within EX28DRAFT_2933 at 243.576 kb on + strand, within EX28DRAFT_2933 at 243.576 kb on + strand, within EX28DRAFT_2933 at 243.581 kb on - strand, within EX28DRAFT_2933 at 243.586 kb on - strand, within EX28DRAFT_2933 at 243.618 kb on - strand, within EX28DRAFT_2933 at 243.757 kb on + strand, within EX28DRAFT_2933 at 243.757 kb on + strand, within EX28DRAFT_2933 at 243.757 kb on + strand, within EX28DRAFT_2933 at 243.835 kb on + strand, within EX28DRAFT_2933 at 243.836 kb on - strand, within EX28DRAFT_2933 at 243.883 kb on - strand, within EX28DRAFT_2933 at 243.883 kb on - strand, within EX28DRAFT_2933 at 244.018 kb on + strand at 244.019 kb on - strand at 244.052 kb on - strand at 244.129 kb on - strand at 244.139 kb on + strand at 244.139 kb on + strand at 244.139 kb on + strand at 244.139 kb on + strand at 244.139 kb on + strand at 244.140 kb on - strand at 244.145 kb on - strand at 244.206 kb on + strand at 244.206 kb on + strand at 244.344 kb on - strand, within EX28DRAFT_2934 at 244.568 kb on + strand, within EX28DRAFT_2934 at 244.569 kb on - strand, within EX28DRAFT_2934 at 244.572 kb on + strand, within EX28DRAFT_2934 at 244.572 kb on + strand, within EX28DRAFT_2934 at 244.573 kb on - strand, within EX28DRAFT_2934 at 244.626 kb on + strand, within EX28DRAFT_2934 at 244.626 kb on + strand, within EX28DRAFT_2934 at 244.632 kb on + strand, within EX28DRAFT_2934 at 244.632 kb on + strand, within EX28DRAFT_2934 at 244.632 kb on + strand, within EX28DRAFT_2934 at 244.632 kb on + strand, within EX28DRAFT_2934 at 244.634 kb on + strand, within EX28DRAFT_2934 at 244.635 kb on - strand, within EX28DRAFT_2934 at 244.810 kb on + strand, within EX28DRAFT_2934 at 244.849 kb on - strand, within EX28DRAFT_2934 at 244.849 kb on - strand, within EX28DRAFT_2934 at 244.854 kb on + strand, within EX28DRAFT_2934 at 244.854 kb on + strand, within EX28DRAFT_2934 at 244.855 kb on - strand, within EX28DRAFT_2934 at 244.887 kb on + strand, within EX28DRAFT_2934
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 241,988 - -0.5 241,988 - +0.8 242,058 + +1.8 242,059 - -1.3 242,069 + +0.1 242,069 + +0.5 242,089 + +0.5 242,126 + -1.6 242,168 - EX28DRAFT_2932 0.10 -1.2 242,170 - EX28DRAFT_2932 0.11 -2.1 242,275 + EX28DRAFT_2932 0.26 -0.1 242,276 - EX28DRAFT_2932 0.26 +0.6 242,330 - EX28DRAFT_2932 0.33 +0.5 242,411 - EX28DRAFT_2932 0.45 -1.2 242,411 - EX28DRAFT_2932 0.45 -0.2 242,419 - EX28DRAFT_2932 0.46 +0.2 242,693 - EX28DRAFT_2932 0.85 +0.3 242,701 + EX28DRAFT_2932 0.86 -0.3 242,740 + -0.9 242,740 + +0.5 242,768 + +0.0 242,769 - -0.9 242,809 + -1.2 242,810 - +0.5 242,840 + -0.1 242,841 - -1.5 242,841 - +0.5 242,920 - +0.9 242,920 - -0.8 242,961 + +4.3 242,962 - +0.3 243,005 + +1.1 243,106 + EX28DRAFT_2933 0.13 -0.4 243,211 + EX28DRAFT_2933 0.23 -1.7 243,307 + EX28DRAFT_2933 0.31 -1.0 243,322 - EX28DRAFT_2933 0.33 +0.5 243,369 + EX28DRAFT_2933 0.37 +0.1 243,389 - EX28DRAFT_2933 0.39 -0.3 243,406 - EX28DRAFT_2933 0.40 -0.8 243,409 + EX28DRAFT_2933 0.41 +1.3 243,544 - EX28DRAFT_2933 0.53 +0.1 243,544 - EX28DRAFT_2933 0.53 -1.8 243,544 - EX28DRAFT_2933 0.53 -0.9 243,576 + EX28DRAFT_2933 0.56 -0.5 243,576 + EX28DRAFT_2933 0.56 +0.7 243,581 - EX28DRAFT_2933 0.57 -0.6 243,586 - EX28DRAFT_2933 0.57 +0.5 243,618 - EX28DRAFT_2933 0.60 +0.2 243,757 + EX28DRAFT_2933 0.73 +0.6 243,757 + EX28DRAFT_2933 0.73 +0.1 243,757 + EX28DRAFT_2933 0.73 +0.0 243,835 + EX28DRAFT_2933 0.80 -0.7 243,836 - EX28DRAFT_2933 0.80 -0.1 243,883 - EX28DRAFT_2933 0.84 -0.1 243,883 - EX28DRAFT_2933 0.84 +0.3 244,018 + -0.6 244,019 - +0.2 244,052 - -0.6 244,129 - +0.4 244,139 + +0.7 244,139 + -0.6 244,139 + -1.0 244,139 + +0.2 244,139 + +1.1 244,140 - +0.3 244,145 - -1.5 244,206 + +2.5 244,206 + -0.1 244,344 - EX28DRAFT_2934 0.12 +0.5 244,568 + EX28DRAFT_2934 0.25 +0.4 244,569 - EX28DRAFT_2934 0.25 -1.3 244,572 + EX28DRAFT_2934 0.25 +0.1 244,572 + EX28DRAFT_2934 0.25 -0.7 244,573 - EX28DRAFT_2934 0.25 -0.5 244,626 + EX28DRAFT_2934 0.28 +0.3 244,626 + EX28DRAFT_2934 0.28 -2.9 244,632 + EX28DRAFT_2934 0.28 -0.3 244,632 + EX28DRAFT_2934 0.28 +0.3 244,632 + EX28DRAFT_2934 0.28 +1.0 244,632 + EX28DRAFT_2934 0.28 +0.7 244,634 + EX28DRAFT_2934 0.28 -0.3 244,635 - EX28DRAFT_2934 0.28 +0.9 244,810 + EX28DRAFT_2934 0.38 -0.3 244,849 - EX28DRAFT_2934 0.40 +0.1 244,849 - EX28DRAFT_2934 0.40 -0.1 244,854 + EX28DRAFT_2934 0.41 +0.3 244,854 + EX28DRAFT_2934 0.41 +1.1 244,855 - EX28DRAFT_2934 0.41 +0.1 244,887 + EX28DRAFT_2934 0.43 +0.5
Or see this region's nucleotide sequence