Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2913

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2910 and EX28DRAFT_2911 are separated by 95 nucleotidesEX28DRAFT_2911 and EX28DRAFT_2912 are separated by 118 nucleotidesEX28DRAFT_2912 and EX28DRAFT_2913 are separated by 244 nucleotidesEX28DRAFT_2913 and EX28DRAFT_2914 overlap by 40 nucleotidesEX28DRAFT_2914 and EX28DRAFT_2915 are separated by 220 nucleotides EX28DRAFT_2910: EX28DRAFT_2910 - Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II, at 220,927 to 223,086 _2910 EX28DRAFT_2911: EX28DRAFT_2911 - RNA, at 223,182 to 223,267 _2911 EX28DRAFT_2912: EX28DRAFT_2912 - RNA, at 223,386 to 223,466 _2912 EX28DRAFT_2913: EX28DRAFT_2913 - Transcriptional regulators, at 223,711 to 224,727 _2913 EX28DRAFT_2914: EX28DRAFT_2914 - Acetyltransferase (GNAT) family, at 224,688 to 225,173 _2914 EX28DRAFT_2915: EX28DRAFT_2915 - Transcriptional regulators, at 225,394 to 226,431 _2915 Position (kb) 223 224 225Strain fitness (log2 ratio) -2 -1 0 1 2 3at 222.735 kb on - strand, within EX28DRAFT_2910at 222.765 kb on + strand, within EX28DRAFT_2910at 222.766 kb on - strand, within EX28DRAFT_2910at 222.814 kb on + strand, within EX28DRAFT_2910at 222.891 kb on - strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.912 kb on + strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.913 kb on - strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.914 kb on + strandat 222.915 kb on - strandat 222.946 kb on + strandat 222.968 kb on - strandat 223.054 kb on - strandat 223.065 kb on + strandat 223.082 kb on - strandat 223.082 kb on - strandat 223.123 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.126 kb on - strandat 223.141 kb on - strandat 223.226 kb on - strand, within EX28DRAFT_2911at 223.235 kb on + strand, within EX28DRAFT_2911at 223.236 kb on - strand, within EX28DRAFT_2911at 223.349 kb on - strandat 223.419 kb on - strand, within EX28DRAFT_2912at 223.419 kb on - strand, within EX28DRAFT_2912at 223.451 kb on + strand, within EX28DRAFT_2912at 223.452 kb on - strand, within EX28DRAFT_2912at 223.457 kb on + strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.458 kb on - strand, within EX28DRAFT_2912at 223.478 kb on - strandat 223.490 kb on - strandat 223.492 kb on + strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.493 kb on - strandat 223.534 kb on + strandat 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 223.844 kb on - strand, within EX28DRAFT_2913at 224.007 kb on + strand, within EX28DRAFT_2913at 224.008 kb on - strand, within EX28DRAFT_2913at 224.306 kb on - strand, within EX28DRAFT_2913at 224.440 kb on + strand, within EX28DRAFT_2913at 224.776 kb on + strand, within EX28DRAFT_2914at 224.776 kb on + strand, within EX28DRAFT_2914at 224.777 kb on - strand, within EX28DRAFT_2914at 224.777 kb on - strand, within EX28DRAFT_2914at 224.859 kb on - strand, within EX28DRAFT_2914at 224.917 kb on + strand, within EX28DRAFT_2914at 224.918 kb on - strand, within EX28DRAFT_2914at 224.918 kb on - strand, within EX28DRAFT_2914at 225.057 kb on - strand, within EX28DRAFT_2914at 225.146 kb on - strandat 225.196 kb on + strandat 225.197 kb on - strandat 225.197 kb on - strandat 225.233 kb on + strandat 225.252 kb on + strandat 225.253 kb on - strandat 225.262 kb on + strandat 225.336 kb on + strandat 225.357 kb on + strandat 225.372 kb on + strandat 225.373 kb on - strandat 225.390 kb on + strandat 225.391 kb on - strandat 225.391 kb on - strandat 225.391 kb on - strandat 225.486 kb on + strandat 225.610 kb on + strand, within EX28DRAFT_2915at 225.611 kb on - strand, within EX28DRAFT_2915

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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222,735 - EX28DRAFT_2910 0.84 -0.6
222,765 + EX28DRAFT_2910 0.85 +0.8
222,766 - EX28DRAFT_2910 0.85 +0.3
222,814 + EX28DRAFT_2910 0.87 +0.3
222,891 - +1.5
222,912 + +0.1
222,912 + -0.5
222,912 + +1.1
222,913 - -1.0
222,913 - -0.1
222,913 - +0.8
222,913 - +0.5
222,914 + -2.1
222,914 + +0.0
222,914 + -0.3
222,914 + +0.2
222,915 - +0.7
222,946 + -0.6
222,968 - -0.6
223,054 - +1.5
223,065 + -1.3
223,082 - +0.4
223,082 - -0.3
223,123 - +1.0
223,126 - +0.5
223,126 - +0.4
223,126 - -0.3
223,141 - -0.9
223,226 - EX28DRAFT_2911 0.51 -0.8
223,235 + EX28DRAFT_2911 0.62 -0.1
223,236 - EX28DRAFT_2911 0.63 -0.5
223,349 - -0.8
223,419 - EX28DRAFT_2912 0.41 +0.6
223,419 - EX28DRAFT_2912 0.41 +0.0
223,451 + EX28DRAFT_2912 0.80 +0.2
223,452 - EX28DRAFT_2912 0.81 +0.3
223,457 + EX28DRAFT_2912 0.88 -0.3
223,458 - EX28DRAFT_2912 0.89 -0.1
223,458 - EX28DRAFT_2912 0.89 -0.1
223,458 - EX28DRAFT_2912 0.89 +0.3
223,478 - +0.3
223,490 - -0.1
223,492 + +0.6
223,493 - +0.4
223,493 - -0.1
223,493 - +0.7
223,534 + +0.3
223,844 - EX28DRAFT_2913 0.13 -1.0
223,844 - EX28DRAFT_2913 0.13 +0.0
223,844 - EX28DRAFT_2913 0.13 +0.2
224,007 + EX28DRAFT_2913 0.29 -0.1
224,008 - EX28DRAFT_2913 0.29 -1.0
224,306 - EX28DRAFT_2913 0.59 +0.3
224,440 + EX28DRAFT_2913 0.72 -1.6
224,776 + EX28DRAFT_2914 0.18 -2.4
224,776 + EX28DRAFT_2914 0.18 +0.5
224,777 - EX28DRAFT_2914 0.18 -0.1
224,777 - EX28DRAFT_2914 0.18 -0.0
224,859 - EX28DRAFT_2914 0.35 +0.5
224,917 + EX28DRAFT_2914 0.47 -0.4
224,918 - EX28DRAFT_2914 0.47 -1.5
224,918 - EX28DRAFT_2914 0.47 -0.1
225,057 - EX28DRAFT_2914 0.76 -0.4
225,146 - -0.4
225,196 + +1.3
225,197 - -2.2
225,197 - +0.1
225,233 + +0.8
225,252 + +0.1
225,253 - +2.3
225,262 + +0.4
225,336 + +0.2
225,357 + +1.0
225,372 + +0.2
225,373 - +0.4
225,390 + +0.3
225,391 - -0.6
225,391 - -0.1
225,391 - +1.9
225,486 + -0.3
225,610 + EX28DRAFT_2915 0.21 +0.6
225,611 - EX28DRAFT_2915 0.21 +2.9

Or see this region's nucleotide sequence