Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2693 and EX28DRAFT_2694 are separated by 129 nucleotides EX28DRAFT_2694 and EX28DRAFT_2695 overlap by 4 nucleotides EX28DRAFT_2695 and EX28DRAFT_2696 are separated by 131 nucleotides
EX28DRAFT_2693: EX28DRAFT_2693 - ATP-dependent chaperone ClpB, at 498 to 3,071
_2693
EX28DRAFT_2694: EX28DRAFT_2694 - YfiH family protein, at 3,201 to 3,932
_2694
EX28DRAFT_2695: EX28DRAFT_2695 - pseudouridine synthase, RluA family, at 3,929 to 4,909
_2695
EX28DRAFT_2696: EX28DRAFT_2696 - Beta-barrel assembly machine subunit BamD, at 5,041 to 5,778
_2696
Position (kb) 3
4
5 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 2.970 kb on + strand at 2.970 kb on + strand at 2.988 kb on - strand at 3.051 kb on - strand at 3.051 kb on - strand at 3.053 kb on + strand at 3.071 kb on + strand at 3.072 kb on - strand at 3.154 kb on + strand at 3.204 kb on + strand at 3.204 kb on + strand at 3.353 kb on + strand, within EX28DRAFT_2694 at 3.365 kb on - strand, within EX28DRAFT_2694 at 3.488 kb on + strand, within EX28DRAFT_2694 at 3.489 kb on - strand, within EX28DRAFT_2694 at 3.489 kb on - strand, within EX28DRAFT_2694 at 3.650 kb on + strand, within EX28DRAFT_2694 at 3.654 kb on - strand, within EX28DRAFT_2694 at 3.658 kb on + strand, within EX28DRAFT_2694 at 3.678 kb on - strand, within EX28DRAFT_2694 at 3.685 kb on + strand, within EX28DRAFT_2694 at 3.685 kb on + strand, within EX28DRAFT_2694 at 3.879 kb on - strand at 3.952 kb on + strand at 3.952 kb on + strand at 3.953 kb on - strand at 3.986 kb on - strand at 3.998 kb on - strand at 4.213 kb on + strand, within EX28DRAFT_2695 at 4.214 kb on - strand, within EX28DRAFT_2695 at 4.376 kb on - strand, within EX28DRAFT_2695 at 4.850 kb on + strand at 4.957 kb on + strand at 4.959 kb on + strand at 4.960 kb on - strand at 4.960 kb on - strand at 4.960 kb on - strand at 5.839 kb on - strand at 5.883 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 2,970 + +1.8 2,970 + -0.2 2,988 - -0.4 3,051 - -0.5 3,051 - +0.1 3,053 + -1.9 3,071 + +0.6 3,072 - -0.5 3,154 + +1.1 3,204 + +0.7 3,204 + -1.2 3,353 + EX28DRAFT_2694 0.21 +1.8 3,365 - EX28DRAFT_2694 0.22 -0.4 3,488 + EX28DRAFT_2694 0.39 +1.8 3,489 - EX28DRAFT_2694 0.39 +1.0 3,489 - EX28DRAFT_2694 0.39 +0.3 3,650 + EX28DRAFT_2694 0.61 +0.9 3,654 - EX28DRAFT_2694 0.62 +0.2 3,658 + EX28DRAFT_2694 0.62 -0.9 3,678 - EX28DRAFT_2694 0.65 +0.4 3,685 + EX28DRAFT_2694 0.66 -0.2 3,685 + EX28DRAFT_2694 0.66 -0.7 3,879 - -0.8 3,952 + -0.3 3,952 + +0.4 3,953 - -1.0 3,986 - -1.2 3,998 - -2.3 4,213 + EX28DRAFT_2695 0.29 -0.6 4,214 - EX28DRAFT_2695 0.29 -2.1 4,376 - EX28DRAFT_2695 0.46 -2.9 4,850 + -0.3 4,957 + -0.7 4,959 + -1.0 4,960 - +0.5 4,960 - +0.0 4,960 - +0.4 5,839 - +0.5 5,883 - +0.6
Or see this region's nucleotide sequence