Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2600

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
2,632,716	+		EX28DRAFT_2598	0.81	+1.0
2,632,716	+		EX28DRAFT_2598	0.81	+0.5
2,632,716	+		EX28DRAFT_2598	0.81	+2.0
2,632,717	-		EX28DRAFT_2598	0.81	+2.5
2,632,717	-		EX28DRAFT_2598	0.81	-0.7
2,632,719	-		EX28DRAFT_2598	0.81	-0.2
2,632,785	+		EX28DRAFT_2598	0.87	-1.2
2,632,785	+		EX28DRAFT_2598	0.87	-4.0
2,632,785	+		EX28DRAFT_2598	0.87	+0.3
2,632,785	+		EX28DRAFT_2598	0.87	+1.3
2,632,785	+		EX28DRAFT_2598	0.87	+4.5
2,632,785	+		EX28DRAFT_2598	0.87	+0.0
2,632,786	-		EX28DRAFT_2598	0.87	+0.7
2,632,786	-		EX28DRAFT_2598	0.87	+1.1
2,632,786	-		EX28DRAFT_2598	0.87	+0.4
2,632,786	-		EX28DRAFT_2598	0.87	-0.1
2,632,786	-		EX28DRAFT_2598	0.87	+0.4
2,632,786	-		EX28DRAFT_2598	0.87	+0.4
2,632,786	-		EX28DRAFT_2598	0.87	+0.2
2,632,786	-		EX28DRAFT_2598	0.87	+0.9
2,632,786	-		EX28DRAFT_2598	0.87	-0.5
2,632,786	-		EX28DRAFT_2598	0.87	+0.4
2,632,787	+		EX28DRAFT_2598	0.87	-1.4
2,632,787	+		EX28DRAFT_2598	0.87	-1.1
2,632,794	-		EX28DRAFT_2598	0.88	+0.8
2,632,877	+				+1.9
2,632,931	+				+0.7
2,632,998	+				+0.7
2,632,998	+				-0.5
2,632,998	+				+0.7
2,632,999	-				+1.0
2,632,999	-				-0.5
2,632,999	-				+1.2
2,633,069	-		EX28DRAFT_2599	0.21	+0.2
2,633,149	-		EX28DRAFT_2599	0.33	-0.3
2,633,155	+		EX28DRAFT_2599	0.34	-0.2
2,633,155	+		EX28DRAFT_2599	0.34	-0.7
2,633,156	-		EX28DRAFT_2599	0.35	+0.5
2,633,156	-		EX28DRAFT_2599	0.35	-2.5
2,633,193	+		EX28DRAFT_2599	0.41	-0.3
2,633,193	+		EX28DRAFT_2599	0.41	+0.2
2,633,193	+		EX28DRAFT_2599	0.41	-0.3
2,633,193	+		EX28DRAFT_2599	0.41	-1.2
2,633,193	+		EX28DRAFT_2599	0.41	+0.7
2,633,194	-		EX28DRAFT_2599	0.41	-0.8
2,633,194	-		EX28DRAFT_2599	0.41	-0.2
2,633,239	-		EX28DRAFT_2599	0.48	-1.1
2,633,239	-		EX28DRAFT_2599	0.48	+1.5
2,633,299	+		EX28DRAFT_2599	0.58	-1.1
2,633,299	+		EX28DRAFT_2599	0.58	-1.5
2,633,341	+		EX28DRAFT_2599	0.64	+0.8
2,633,438	-		EX28DRAFT_2599	0.80	+1.4
2,633,468	+		EX28DRAFT_2599	0.85	-1.0
2,633,469	-		EX28DRAFT_2599	0.85	+0.1
2,633,488	+		EX28DRAFT_2599	0.88	-0.6
2,633,489	-		EX28DRAFT_2599	0.88	+0.9
2,633,489	-		EX28DRAFT_2599	0.88	+0.6
2,633,583	+				+0.5
2,633,584	-				-0.2
2,633,608	-				+0.8
2,633,619	-				+0.8
2,633,666	+				+0.4
2,633,666	+				-1.1
2,633,668	+				-0.6
2,633,668	+				+0.8
2,633,722	+				+1.0
2,633,722	+				-0.1
2,633,723	-				-0.3
2,633,723	-				+0.3
2,633,723	-				-0.0
2,633,738	-				-0.7
2,633,831	+				+0.2
2,633,858	-				+0.2
2,633,864	-				+1.7
2,633,864	-				+1.9
2,633,864	-				+0.1
2,633,879	-				+0.9
2,633,952	-		EX28DRAFT_2600	0.11	+0.4
2,633,952	-		EX28DRAFT_2600	0.11	-0.2
2,633,956	+		EX28DRAFT_2600	0.11	-0.1
2,633,956	+		EX28DRAFT_2600	0.11	+0.4
2,633,956	+		EX28DRAFT_2600	0.11	-1.0
2,633,957	-		EX28DRAFT_2600	0.11	+0.1
2,634,025	-		EX28DRAFT_2600	0.13	+0.6
2,634,034	+		EX28DRAFT_2600	0.14	+0.8
2,634,035	-		EX28DRAFT_2600	0.14	+0.9
2,634,073	+		EX28DRAFT_2600	0.15	+0.6
2,634,114	-		EX28DRAFT_2600	0.17	+1.1
2,634,128	-		EX28DRAFT_2600	0.17	-1.1
2,634,176	-		EX28DRAFT_2600	0.19	-0.7
2,634,226	+		EX28DRAFT_2600	0.21	-0.1
2,634,227	-		EX28DRAFT_2600	0.21	+0.0
2,634,359	+		EX28DRAFT_2600	0.25	+0.5
2,634,425	-		EX28DRAFT_2600	0.28	-0.1
2,634,512	+		EX28DRAFT_2600	0.31	-0.6
2,634,610	+		EX28DRAFT_2600	0.34	+0.2
2,634,610	+		EX28DRAFT_2600	0.34	-0.1
2,634,617	-		EX28DRAFT_2600	0.35	-0.6
2,634,617	-		EX28DRAFT_2600	0.35	-0.1
2,634,617	-		EX28DRAFT_2600	0.35	-0.2
2,634,617	-		EX28DRAFT_2600	0.35	+1.0
2,634,624	+		EX28DRAFT_2600	0.35	+0.8
2,634,648	-		EX28DRAFT_2600	0.36	-0.2
2,634,754	+		EX28DRAFT_2600	0.40	-0.2
2,634,754	+		EX28DRAFT_2600	0.40	+0.2
2,634,835	+		EX28DRAFT_2600	0.42	-0.5
2,634,839	+		EX28DRAFT_2600	0.43	+1.5
2,634,839	+		EX28DRAFT_2600	0.43	-0.3
2,634,840	-		EX28DRAFT_2600	0.43	+1.0
2,634,840	-		EX28DRAFT_2600	0.43	+0.5
2,634,851	+		EX28DRAFT_2600	0.43	-0.3
2,634,852	-		EX28DRAFT_2600	0.43	-0.1
2,634,852	-		EX28DRAFT_2600	0.43	-1.0
2,634,852	-		EX28DRAFT_2600	0.43	-0.1
2,634,853	+		EX28DRAFT_2600	0.43	+0.6
2,634,853	+		EX28DRAFT_2600	0.43	-0.5
2,634,853	+		EX28DRAFT_2600	0.43	-2.1
2,634,853	+		EX28DRAFT_2600	0.43	-0.4
2,634,854	-		EX28DRAFT_2600	0.43	+0.2
2,634,854	-		EX28DRAFT_2600	0.43	+0.7
2,634,887	-		EX28DRAFT_2600	0.44	+1.1
2,634,887	-		EX28DRAFT_2600	0.44	-0.5
2,635,004	-		EX28DRAFT_2600	0.49	+0.7
2,635,042	+		EX28DRAFT_2600	0.50	+0.1
2,635,042	+		EX28DRAFT_2600	0.50	-0.1
2,635,043	-		EX28DRAFT_2600	0.50	-0.9
2,635,043	-		EX28DRAFT_2600	0.50	+0.6
2,635,174	-		EX28DRAFT_2600	0.55	-0.4
2,635,193	+		EX28DRAFT_2600	0.55	-1.5
2,635,194	-		EX28DRAFT_2600	0.55	+0.7
2,635,242	-		EX28DRAFT_2600	0.57	+1.0
2,635,332	-		EX28DRAFT_2600	0.60	-0.2
2,635,341	+		EX28DRAFT_2600	0.61	+0.4
2,635,363	+		EX28DRAFT_2600	0.61	+1.4
2,635,363	+		EX28DRAFT_2600	0.61	+0.1
2,635,364	-		EX28DRAFT_2600	0.62	-2.3
2,635,364	-		EX28DRAFT_2600	0.62	+0.3
2,635,364	-		EX28DRAFT_2600	0.62	+0.8
2,635,364	-		EX28DRAFT_2600	0.62	+1.8
2,635,364	-		EX28DRAFT_2600	0.62	-0.2
2,635,364	-		EX28DRAFT_2600	0.62	+0.3
2,635,482	-		EX28DRAFT_2600	0.66	+0.5
2,635,483	+		EX28DRAFT_2600	0.66	-0.1
2,635,483	+		EX28DRAFT_2600	0.66	+0.5
2,635,483	+		EX28DRAFT_2600	0.66	-0.0
2,635,483	+		EX28DRAFT_2600	0.66	-0.4
2,635,483	+		EX28DRAFT_2600	0.66	+0.4
2,635,535	+		EX28DRAFT_2600	0.68	+0.1
2,635,536	-		EX28DRAFT_2600	0.68	+0.7
2,635,536	-		EX28DRAFT_2600	0.68	+0.1
2,635,592	+		EX28DRAFT_2600	0.70	-1.0
2,635,592	+		EX28DRAFT_2600	0.70	-0.8
2,635,593	-		EX28DRAFT_2600	0.70	-1.4
2,635,593	-		EX28DRAFT_2600	0.70	-0.3
2,635,733	-		EX28DRAFT_2600	0.75	-0.5
2,635,733	-		EX28DRAFT_2600	0.75	+1.3
2,635,782	+		EX28DRAFT_2600	0.77	-0.7
2,635,782	+		EX28DRAFT_2600	0.77	-0.1
2,635,860	-		EX28DRAFT_2600	0.79	+0.3
2,635,936	+		EX28DRAFT_2600	0.82	+0.5
2,635,937	-		EX28DRAFT_2600	0.82	-0.1
2,635,999	+		EX28DRAFT_2600	0.84	+0.1
2,636,000	-		EX28DRAFT_2600	0.84	+0.8
2,636,000	-		EX28DRAFT_2600	0.84	+0.6
2,636,000	-		EX28DRAFT_2600	0.84	+0.2
2,636,003	+		EX28DRAFT_2600	0.85	+0.2
2,636,021	+		EX28DRAFT_2600	0.85	+0.7
2,636,025	+		EX28DRAFT_2600	0.85	+0.3
2,636,103	-		EX28DRAFT_2600	0.88	+0.1
2,636,103	-		EX28DRAFT_2600	0.88	+0.1
2,636,115	-		EX28DRAFT_2600	0.89	-1.1
2,636,186	-				-0.0
2,636,189	-				-0.4
2,636,189	-				-1.0
2,636,189	-				+0.6
2,636,198	+				+0.9
2,636,278	+				-0.1
2,636,284	+				+2.8
2,636,307	-				+0.8
2,636,309	+				-1.5
2,636,328	-				-0.8
2,636,330	-				-2.5
2,636,330	-				-0.4
2,636,456	+				-0.3
2,636,508	-				+2.0
2,636,659	+				-0.6
2,636,760	-				-0.3
2,636,844	+				-0.4
2,636,849	+				-1.0