Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2508

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2507 and EX28DRAFT_2508 are separated by 38 nucleotidesEX28DRAFT_2508 and EX28DRAFT_2509 are separated by 102 nucleotides EX28DRAFT_2507: EX28DRAFT_2507 - ABC-type uncharacterized transport system, permease component, at 2,537,391 to 2,538,218 _2507 EX28DRAFT_2508: EX28DRAFT_2508 - Beta-galactosidase/beta-glucuronidase, at 2,538,257 to 2,541,346 _2508 EX28DRAFT_2509: EX28DRAFT_2509 - transcriptional regulator, LacI family, at 2,541,449 to 2,542,519 _2509 Position (kb) 2538 2539 2540 2541 2542Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2537.263 kb on - strandat 2537.263 kb on - strandat 2537.358 kb on + strandat 2537.452 kb on + strandat 2537.452 kb on + strandat 2537.514 kb on - strand, within EX28DRAFT_2507at 2537.514 kb on - strand, within EX28DRAFT_2507at 2537.615 kb on - strand, within EX28DRAFT_2507at 2537.920 kb on + strand, within EX28DRAFT_2507at 2537.921 kb on - strand, within EX28DRAFT_2507at 2538.170 kb on - strandat 2538.180 kb on + strandat 2538.181 kb on - strandat 2538.181 kb on - strandat 2538.181 kb on - strandat 2538.283 kb on + strandat 2538.446 kb on - strandat 2538.544 kb on + strandat 2538.546 kb on + strandat 2538.546 kb on + strandat 2538.546 kb on + strandat 2538.573 kb on - strand, within EX28DRAFT_2508at 2538.573 kb on - strand, within EX28DRAFT_2508at 2538.573 kb on - strand, within EX28DRAFT_2508at 2538.885 kb on + strand, within EX28DRAFT_2508at 2538.885 kb on + strand, within EX28DRAFT_2508at 2538.886 kb on - strand, within EX28DRAFT_2508at 2539.150 kb on + strand, within EX28DRAFT_2508at 2539.232 kb on + strand, within EX28DRAFT_2508at 2539.454 kb on - strand, within EX28DRAFT_2508at 2539.592 kb on - strand, within EX28DRAFT_2508at 2539.792 kb on + strand, within EX28DRAFT_2508at 2539.884 kb on + strand, within EX28DRAFT_2508at 2539.885 kb on - strand, within EX28DRAFT_2508at 2539.885 kb on - strand, within EX28DRAFT_2508at 2539.927 kb on - strand, within EX28DRAFT_2508at 2539.997 kb on - strand, within EX28DRAFT_2508at 2540.119 kb on - strand, within EX28DRAFT_2508at 2540.692 kb on + strand, within EX28DRAFT_2508at 2540.754 kb on + strand, within EX28DRAFT_2508at 2540.754 kb on + strand, within EX28DRAFT_2508at 2540.755 kb on - strand, within EX28DRAFT_2508at 2540.778 kb on - strand, within EX28DRAFT_2508at 2540.778 kb on - strand, within EX28DRAFT_2508at 2540.778 kb on - strand, within EX28DRAFT_2508at 2541.022 kb on + strand, within EX28DRAFT_2508at 2541.043 kb on - strandat 2541.157 kb on - strandat 2541.157 kb on - strandat 2541.157 kb on - strandat 2541.161 kb on - strandat 2541.349 kb on + strandat 2541.408 kb on - strandat 2541.526 kb on + strandat 2541.527 kb on - strandat 2541.557 kb on - strand, within EX28DRAFT_2509at 2541.877 kb on - strand, within EX28DRAFT_2509

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,537,263 - -0.2
2,537,263 - -0.1
2,537,358 + -0.4
2,537,452 + -0.0
2,537,452 + +0.6
2,537,514 - EX28DRAFT_2507 0.15 +0.2
2,537,514 - EX28DRAFT_2507 0.15 +1.1
2,537,615 - EX28DRAFT_2507 0.27 -0.5
2,537,920 + EX28DRAFT_2507 0.64 +2.8
2,537,921 - EX28DRAFT_2507 0.64 +0.5
2,538,170 - +0.7
2,538,180 + +1.4
2,538,181 - +0.4
2,538,181 - +0.2
2,538,181 - +0.3
2,538,283 + +0.0
2,538,446 - -1.5
2,538,544 + +0.2
2,538,546 + +1.1
2,538,546 + +1.1
2,538,546 + +0.3
2,538,573 - EX28DRAFT_2508 0.10 -0.3
2,538,573 - EX28DRAFT_2508 0.10 -0.4
2,538,573 - EX28DRAFT_2508 0.10 +0.1
2,538,885 + EX28DRAFT_2508 0.20 -2.6
2,538,885 + EX28DRAFT_2508 0.20 -1.2
2,538,886 - EX28DRAFT_2508 0.20 -0.6
2,539,150 + EX28DRAFT_2508 0.29 -0.2
2,539,232 + EX28DRAFT_2508 0.32 -1.3
2,539,454 - EX28DRAFT_2508 0.39 +1.3
2,539,592 - EX28DRAFT_2508 0.43 -1.9
2,539,792 + EX28DRAFT_2508 0.50 -0.2
2,539,884 + EX28DRAFT_2508 0.53 -0.1
2,539,885 - EX28DRAFT_2508 0.53 -0.8
2,539,885 - EX28DRAFT_2508 0.53 -1.3
2,539,927 - EX28DRAFT_2508 0.54 +0.5
2,539,997 - EX28DRAFT_2508 0.56 +2.3
2,540,119 - EX28DRAFT_2508 0.60 +0.3
2,540,692 + EX28DRAFT_2508 0.79 +2.8
2,540,754 + EX28DRAFT_2508 0.81 +0.3
2,540,754 + EX28DRAFT_2508 0.81 -0.3
2,540,755 - EX28DRAFT_2508 0.81 +0.3
2,540,778 - EX28DRAFT_2508 0.82 +0.1
2,540,778 - EX28DRAFT_2508 0.82 +0.5
2,540,778 - EX28DRAFT_2508 0.82 +0.6
2,541,022 + EX28DRAFT_2508 0.89 -1.2
2,541,043 - -2.0
2,541,157 - -2.1
2,541,157 - +0.3
2,541,157 - -1.8
2,541,161 - -0.6
2,541,349 + +0.8
2,541,408 - +0.2
2,541,526 + -0.2
2,541,527 - +1.0
2,541,557 - EX28DRAFT_2509 0.10 -1.2
2,541,877 - EX28DRAFT_2509 0.40 +0.9

Or see this region's nucleotide sequence