Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2507 and EX28DRAFT_2508 are separated by 38 nucleotides EX28DRAFT_2508 and EX28DRAFT_2509 are separated by 102 nucleotides
EX28DRAFT_2507: EX28DRAFT_2507 - ABC-type uncharacterized transport system, permease component, at 2,537,391 to 2,538,218
_2507
EX28DRAFT_2508: EX28DRAFT_2508 - Beta-galactosidase/beta-glucuronidase, at 2,538,257 to 2,541,346
_2508
EX28DRAFT_2509: EX28DRAFT_2509 - transcriptional regulator, LacI family, at 2,541,449 to 2,542,519
_2509
Position (kb)
2538
2539
2540
2541
2542 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2537.263 kb on - strand at 2537.263 kb on - strand at 2537.358 kb on + strand at 2537.452 kb on + strand at 2537.452 kb on + strand at 2537.514 kb on - strand, within EX28DRAFT_2507 at 2537.514 kb on - strand, within EX28DRAFT_2507 at 2537.615 kb on - strand, within EX28DRAFT_2507 at 2537.920 kb on + strand, within EX28DRAFT_2507 at 2537.921 kb on - strand, within EX28DRAFT_2507 at 2538.170 kb on - strand at 2538.180 kb on + strand at 2538.181 kb on - strand at 2538.181 kb on - strand at 2538.181 kb on - strand at 2538.283 kb on + strand at 2538.446 kb on - strand at 2538.544 kb on + strand at 2538.546 kb on + strand at 2538.546 kb on + strand at 2538.546 kb on + strand at 2538.573 kb on - strand, within EX28DRAFT_2508 at 2538.573 kb on - strand, within EX28DRAFT_2508 at 2538.573 kb on - strand, within EX28DRAFT_2508 at 2538.885 kb on + strand, within EX28DRAFT_2508 at 2538.885 kb on + strand, within EX28DRAFT_2508 at 2538.886 kb on - strand, within EX28DRAFT_2508 at 2539.150 kb on + strand, within EX28DRAFT_2508 at 2539.232 kb on + strand, within EX28DRAFT_2508 at 2539.454 kb on - strand, within EX28DRAFT_2508 at 2539.592 kb on - strand, within EX28DRAFT_2508 at 2539.792 kb on + strand, within EX28DRAFT_2508 at 2539.884 kb on + strand, within EX28DRAFT_2508 at 2539.885 kb on - strand, within EX28DRAFT_2508 at 2539.885 kb on - strand, within EX28DRAFT_2508 at 2539.927 kb on - strand, within EX28DRAFT_2508 at 2539.997 kb on - strand, within EX28DRAFT_2508 at 2540.119 kb on - strand, within EX28DRAFT_2508 at 2540.692 kb on + strand, within EX28DRAFT_2508 at 2540.754 kb on + strand, within EX28DRAFT_2508 at 2540.754 kb on + strand, within EX28DRAFT_2508 at 2540.755 kb on - strand, within EX28DRAFT_2508 at 2540.778 kb on - strand, within EX28DRAFT_2508 at 2540.778 kb on - strand, within EX28DRAFT_2508 at 2540.778 kb on - strand, within EX28DRAFT_2508 at 2541.022 kb on + strand, within EX28DRAFT_2508 at 2541.043 kb on - strand at 2541.157 kb on - strand at 2541.157 kb on - strand at 2541.157 kb on - strand at 2541.161 kb on - strand at 2541.349 kb on + strand at 2541.408 kb on - strand at 2541.526 kb on + strand at 2541.527 kb on - strand at 2541.557 kb on - strand, within EX28DRAFT_2509 at 2541.877 kb on - strand, within EX28DRAFT_2509
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 2,537,263 - -0.2 2,537,263 - -0.1 2,537,358 + -0.4 2,537,452 + -0.0 2,537,452 + +0.6 2,537,514 - EX28DRAFT_2507 0.15 +0.2 2,537,514 - EX28DRAFT_2507 0.15 +1.1 2,537,615 - EX28DRAFT_2507 0.27 -0.5 2,537,920 + EX28DRAFT_2507 0.64 +2.8 2,537,921 - EX28DRAFT_2507 0.64 +0.5 2,538,170 - +0.7 2,538,180 + +1.4 2,538,181 - +0.4 2,538,181 - +0.2 2,538,181 - +0.3 2,538,283 + +0.0 2,538,446 - -1.5 2,538,544 + +0.2 2,538,546 + +1.1 2,538,546 + +1.1 2,538,546 + +0.3 2,538,573 - EX28DRAFT_2508 0.10 -0.3 2,538,573 - EX28DRAFT_2508 0.10 -0.4 2,538,573 - EX28DRAFT_2508 0.10 +0.1 2,538,885 + EX28DRAFT_2508 0.20 -2.6 2,538,885 + EX28DRAFT_2508 0.20 -1.2 2,538,886 - EX28DRAFT_2508 0.20 -0.6 2,539,150 + EX28DRAFT_2508 0.29 -0.2 2,539,232 + EX28DRAFT_2508 0.32 -1.3 2,539,454 - EX28DRAFT_2508 0.39 +1.3 2,539,592 - EX28DRAFT_2508 0.43 -1.9 2,539,792 + EX28DRAFT_2508 0.50 -0.2 2,539,884 + EX28DRAFT_2508 0.53 -0.1 2,539,885 - EX28DRAFT_2508 0.53 -0.8 2,539,885 - EX28DRAFT_2508 0.53 -1.3 2,539,927 - EX28DRAFT_2508 0.54 +0.5 2,539,997 - EX28DRAFT_2508 0.56 +2.3 2,540,119 - EX28DRAFT_2508 0.60 +0.3 2,540,692 + EX28DRAFT_2508 0.79 +2.8 2,540,754 + EX28DRAFT_2508 0.81 +0.3 2,540,754 + EX28DRAFT_2508 0.81 -0.3 2,540,755 - EX28DRAFT_2508 0.81 +0.3 2,540,778 - EX28DRAFT_2508 0.82 +0.1 2,540,778 - EX28DRAFT_2508 0.82 +0.5 2,540,778 - EX28DRAFT_2508 0.82 +0.6 2,541,022 + EX28DRAFT_2508 0.89 -1.2 2,541,043 - -2.0 2,541,157 - -2.1 2,541,157 - +0.3 2,541,157 - -1.8 2,541,161 - -0.6 2,541,349 + +0.8 2,541,408 - +0.2 2,541,526 + -0.2 2,541,527 - +1.0 2,541,557 - EX28DRAFT_2509 0.10 -1.2 2,541,877 - EX28DRAFT_2509 0.40 +0.9
Or see this region's nucleotide sequence