Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2238

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2237 and EX28DRAFT_2238 are separated by 5 nucleotidesEX28DRAFT_2238 and EX28DRAFT_2239 overlap by 7 nucleotides EX28DRAFT_2237: EX28DRAFT_2237 - galactose-1-phosphate uridylyltransferase, family 1, at 2,260,708 to 2,261,754 _2237 EX28DRAFT_2238: EX28DRAFT_2238 - galactokinase, at 2,261,760 to 2,262,908 _2238 EX28DRAFT_2239: EX28DRAFT_2239 - galactose mutarotase, at 2,262,902 to 2,263,942 _2239 Position (kb) 2261 2262 2263Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2260.912 kb on + strand, within EX28DRAFT_2237at 2261.140 kb on + strand, within EX28DRAFT_2237at 2261.272 kb on + strand, within EX28DRAFT_2237at 2261.309 kb on - strand, within EX28DRAFT_2237at 2261.643 kb on + strand, within EX28DRAFT_2237at 2261.643 kb on + strand, within EX28DRAFT_2237at 2261.644 kb on - strand, within EX28DRAFT_2237at 2261.653 kb on + strandat 2261.871 kb on + strandat 2261.872 kb on - strandat 2262.038 kb on + strand, within EX28DRAFT_2238at 2262.039 kb on - strand, within EX28DRAFT_2238at 2262.043 kb on - strand, within EX28DRAFT_2238at 2262.043 kb on - strand, within EX28DRAFT_2238at 2262.103 kb on + strand, within EX28DRAFT_2238at 2262.104 kb on - strand, within EX28DRAFT_2238at 2262.104 kb on - strand, within EX28DRAFT_2238at 2262.108 kb on - strand, within EX28DRAFT_2238at 2262.139 kb on + strand, within EX28DRAFT_2238at 2262.178 kb on + strand, within EX28DRAFT_2238at 2262.192 kb on + strand, within EX28DRAFT_2238at 2262.379 kb on + strand, within EX28DRAFT_2238at 2262.870 kb on + strandat 2262.870 kb on + strandat 2262.870 kb on + strandat 2262.871 kb on - strandat 2262.871 kb on - strandat 2262.871 kb on - strandat 2262.878 kb on + strandat 2262.879 kb on - strandat 2262.920 kb on - strandat 2263.026 kb on + strand, within EX28DRAFT_2239at 2263.026 kb on + strand, within EX28DRAFT_2239at 2263.027 kb on - strand, within EX28DRAFT_2239at 2263.031 kb on - strand, within EX28DRAFT_2239at 2263.085 kb on + strand, within EX28DRAFT_2239at 2263.085 kb on + strand, within EX28DRAFT_2239at 2263.104 kb on - strand, within EX28DRAFT_2239at 2263.175 kb on + strand, within EX28DRAFT_2239at 2263.430 kb on + strand, within EX28DRAFT_2239at 2263.431 kb on - strand, within EX28DRAFT_2239at 2263.623 kb on + strand, within EX28DRAFT_2239at 2263.624 kb on - strand, within EX28DRAFT_2239at 2263.624 kb on - strand, within EX28DRAFT_2239at 2263.631 kb on + strand, within EX28DRAFT_2239at 2263.631 kb on + strand, within EX28DRAFT_2239at 2263.667 kb on - strand, within EX28DRAFT_2239at 2263.724 kb on + strand, within EX28DRAFT_2239at 2263.724 kb on + strand, within EX28DRAFT_2239at 2263.764 kb on - strand, within EX28DRAFT_2239at 2263.904 kb on + strandat 2263.905 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,260,912 + EX28DRAFT_2237 0.19 +0.0
2,261,140 + EX28DRAFT_2237 0.41 -1.6
2,261,272 + EX28DRAFT_2237 0.54 -1.0
2,261,309 - EX28DRAFT_2237 0.57 -0.5
2,261,643 + EX28DRAFT_2237 0.89 -0.7
2,261,643 + EX28DRAFT_2237 0.89 -0.6
2,261,644 - EX28DRAFT_2237 0.89 -2.6
2,261,653 + -0.5
2,261,871 + -1.4
2,261,872 - -0.6
2,262,038 + EX28DRAFT_2238 0.24 -1.9
2,262,039 - EX28DRAFT_2238 0.24 -1.0
2,262,043 - EX28DRAFT_2238 0.25 -0.1
2,262,043 - EX28DRAFT_2238 0.25 -0.2
2,262,103 + EX28DRAFT_2238 0.30 -0.8
2,262,104 - EX28DRAFT_2238 0.30 -0.8
2,262,104 - EX28DRAFT_2238 0.30 +1.3
2,262,108 - EX28DRAFT_2238 0.30 +0.6
2,262,139 + EX28DRAFT_2238 0.33 -0.7
2,262,178 + EX28DRAFT_2238 0.36 +0.4
2,262,192 + EX28DRAFT_2238 0.38 -0.2
2,262,379 + EX28DRAFT_2238 0.54 +0.0
2,262,870 + +0.5
2,262,870 + +0.4
2,262,870 + -1.0
2,262,871 - +0.4
2,262,871 - -2.2
2,262,871 - -0.0
2,262,878 + +2.6
2,262,879 - +0.2
2,262,920 - -0.4
2,263,026 + EX28DRAFT_2239 0.12 +1.3
2,263,026 + EX28DRAFT_2239 0.12 -1.2
2,263,027 - EX28DRAFT_2239 0.12 -0.4
2,263,031 - EX28DRAFT_2239 0.12 -1.6
2,263,085 + EX28DRAFT_2239 0.18 -1.4
2,263,085 + EX28DRAFT_2239 0.18 -0.6
2,263,104 - EX28DRAFT_2239 0.19 -0.0
2,263,175 + EX28DRAFT_2239 0.26 -1.0
2,263,430 + EX28DRAFT_2239 0.51 +0.3
2,263,431 - EX28DRAFT_2239 0.51 +1.7
2,263,623 + EX28DRAFT_2239 0.69 -1.1
2,263,624 - EX28DRAFT_2239 0.69 -0.7
2,263,624 - EX28DRAFT_2239 0.69 -3.3
2,263,631 + EX28DRAFT_2239 0.70 +0.2
2,263,631 + EX28DRAFT_2239 0.70 -1.9
2,263,667 - EX28DRAFT_2239 0.73 +0.3
2,263,724 + EX28DRAFT_2239 0.79 -2.7
2,263,724 + EX28DRAFT_2239 0.79 -1.0
2,263,764 - EX28DRAFT_2239 0.83 -0.5
2,263,904 + -1.9
2,263,905 - +2.7

Or see this region's nucleotide sequence