Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2237 and EX28DRAFT_2238 are separated by 5 nucleotides EX28DRAFT_2238 and EX28DRAFT_2239 overlap by 7 nucleotides
EX28DRAFT_2237: EX28DRAFT_2237 - galactose-1-phosphate uridylyltransferase, family 1, at 2,260,708 to 2,261,754
_2237
EX28DRAFT_2238: EX28DRAFT_2238 - galactokinase, at 2,261,760 to 2,262,908
_2238
EX28DRAFT_2239: EX28DRAFT_2239 - galactose mutarotase, at 2,262,902 to 2,263,942
_2239
Position (kb)
2261
2262
2263 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2260.912 kb on + strand, within EX28DRAFT_2237 at 2261.140 kb on + strand, within EX28DRAFT_2237 at 2261.272 kb on + strand, within EX28DRAFT_2237 at 2261.309 kb on - strand, within EX28DRAFT_2237 at 2261.643 kb on + strand, within EX28DRAFT_2237 at 2261.643 kb on + strand, within EX28DRAFT_2237 at 2261.644 kb on - strand, within EX28DRAFT_2237 at 2261.653 kb on + strand at 2261.871 kb on + strand at 2261.872 kb on - strand at 2262.038 kb on + strand, within EX28DRAFT_2238 at 2262.039 kb on - strand, within EX28DRAFT_2238 at 2262.043 kb on - strand, within EX28DRAFT_2238 at 2262.043 kb on - strand, within EX28DRAFT_2238 at 2262.103 kb on + strand, within EX28DRAFT_2238 at 2262.104 kb on - strand, within EX28DRAFT_2238 at 2262.104 kb on - strand, within EX28DRAFT_2238 at 2262.108 kb on - strand, within EX28DRAFT_2238 at 2262.139 kb on + strand, within EX28DRAFT_2238 at 2262.178 kb on + strand, within EX28DRAFT_2238 at 2262.192 kb on + strand, within EX28DRAFT_2238 at 2262.379 kb on + strand, within EX28DRAFT_2238 at 2262.870 kb on + strand at 2262.870 kb on + strand at 2262.870 kb on + strand at 2262.871 kb on - strand at 2262.871 kb on - strand at 2262.871 kb on - strand at 2262.878 kb on + strand at 2262.879 kb on - strand at 2262.920 kb on - strand at 2263.026 kb on + strand, within EX28DRAFT_2239 at 2263.026 kb on + strand, within EX28DRAFT_2239 at 2263.027 kb on - strand, within EX28DRAFT_2239 at 2263.031 kb on - strand, within EX28DRAFT_2239 at 2263.085 kb on + strand, within EX28DRAFT_2239 at 2263.085 kb on + strand, within EX28DRAFT_2239 at 2263.104 kb on - strand, within EX28DRAFT_2239 at 2263.175 kb on + strand, within EX28DRAFT_2239 at 2263.430 kb on + strand, within EX28DRAFT_2239 at 2263.431 kb on - strand, within EX28DRAFT_2239 at 2263.623 kb on + strand, within EX28DRAFT_2239 at 2263.624 kb on - strand, within EX28DRAFT_2239 at 2263.624 kb on - strand, within EX28DRAFT_2239 at 2263.631 kb on + strand, within EX28DRAFT_2239 at 2263.631 kb on + strand, within EX28DRAFT_2239 at 2263.667 kb on - strand, within EX28DRAFT_2239 at 2263.724 kb on + strand, within EX28DRAFT_2239 at 2263.724 kb on + strand, within EX28DRAFT_2239 at 2263.764 kb on - strand, within EX28DRAFT_2239 at 2263.904 kb on + strand at 2263.905 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 2,260,912 + EX28DRAFT_2237 0.19 +0.0 2,261,140 + EX28DRAFT_2237 0.41 -1.6 2,261,272 + EX28DRAFT_2237 0.54 -1.0 2,261,309 - EX28DRAFT_2237 0.57 -0.5 2,261,643 + EX28DRAFT_2237 0.89 -0.7 2,261,643 + EX28DRAFT_2237 0.89 -0.6 2,261,644 - EX28DRAFT_2237 0.89 -2.6 2,261,653 + -0.5 2,261,871 + -1.4 2,261,872 - -0.6 2,262,038 + EX28DRAFT_2238 0.24 -1.9 2,262,039 - EX28DRAFT_2238 0.24 -1.0 2,262,043 - EX28DRAFT_2238 0.25 -0.1 2,262,043 - EX28DRAFT_2238 0.25 -0.2 2,262,103 + EX28DRAFT_2238 0.30 -0.8 2,262,104 - EX28DRAFT_2238 0.30 -0.8 2,262,104 - EX28DRAFT_2238 0.30 +1.3 2,262,108 - EX28DRAFT_2238 0.30 +0.6 2,262,139 + EX28DRAFT_2238 0.33 -0.7 2,262,178 + EX28DRAFT_2238 0.36 +0.4 2,262,192 + EX28DRAFT_2238 0.38 -0.2 2,262,379 + EX28DRAFT_2238 0.54 +0.0 2,262,870 + +0.5 2,262,870 + +0.4 2,262,870 + -1.0 2,262,871 - +0.4 2,262,871 - -2.2 2,262,871 - -0.0 2,262,878 + +2.6 2,262,879 - +0.2 2,262,920 - -0.4 2,263,026 + EX28DRAFT_2239 0.12 +1.3 2,263,026 + EX28DRAFT_2239 0.12 -1.2 2,263,027 - EX28DRAFT_2239 0.12 -0.4 2,263,031 - EX28DRAFT_2239 0.12 -1.6 2,263,085 + EX28DRAFT_2239 0.18 -1.4 2,263,085 + EX28DRAFT_2239 0.18 -0.6 2,263,104 - EX28DRAFT_2239 0.19 -0.0 2,263,175 + EX28DRAFT_2239 0.26 -1.0 2,263,430 + EX28DRAFT_2239 0.51 +0.3 2,263,431 - EX28DRAFT_2239 0.51 +1.7 2,263,623 + EX28DRAFT_2239 0.69 -1.1 2,263,624 - EX28DRAFT_2239 0.69 -0.7 2,263,624 - EX28DRAFT_2239 0.69 -3.3 2,263,631 + EX28DRAFT_2239 0.70 +0.2 2,263,631 + EX28DRAFT_2239 0.70 -1.9 2,263,667 - EX28DRAFT_2239 0.73 +0.3 2,263,724 + EX28DRAFT_2239 0.79 -2.7 2,263,724 + EX28DRAFT_2239 0.79 -1.0 2,263,764 - EX28DRAFT_2239 0.83 -0.5 2,263,904 + -1.9 2,263,905 - +2.7
Or see this region's nucleotide sequence