Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_2236

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_2235 and EX28DRAFT_2236 are separated by 201 nucleotidesEX28DRAFT_2236 and EX28DRAFT_2237 are separated by 9 nucleotides EX28DRAFT_2235: EX28DRAFT_2235 - ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA, at 2,258,008 to 2,259,480 _2235 EX28DRAFT_2236: EX28DRAFT_2236 - UDP-glucose-4-epimerase GalE, at 2,259,682 to 2,260,698 _2236 EX28DRAFT_2237: EX28DRAFT_2237 - galactose-1-phosphate uridylyltransferase, family 1, at 2,260,708 to 2,261,754 _2237 Position (kb) 2259 2260 2261Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2258.724 kb on + strand, within EX28DRAFT_2235at 2258.726 kb on + strand, within EX28DRAFT_2235at 2258.815 kb on + strand, within EX28DRAFT_2235at 2258.844 kb on + strand, within EX28DRAFT_2235at 2258.949 kb on + strand, within EX28DRAFT_2235at 2258.949 kb on + strand, within EX28DRAFT_2235at 2259.019 kb on - strand, within EX28DRAFT_2235at 2259.095 kb on - strand, within EX28DRAFT_2235at 2259.112 kb on - strand, within EX28DRAFT_2235at 2259.207 kb on + strand, within EX28DRAFT_2235at 2259.208 kb on - strand, within EX28DRAFT_2235at 2259.268 kb on - strand, within EX28DRAFT_2235at 2259.268 kb on - strand, within EX28DRAFT_2235at 2259.348 kb on + strandat 2259.348 kb on + strandat 2259.348 kb on + strandat 2259.349 kb on - strandat 2259.349 kb on - strandat 2259.514 kb on - strandat 2259.514 kb on - strandat 2259.526 kb on + strandat 2259.526 kb on + strandat 2259.527 kb on - strandat 2259.547 kb on + strandat 2259.547 kb on + strandat 2259.547 kb on + strandat 2259.568 kb on - strandat 2259.645 kb on - strandat 2259.651 kb on - strandat 2259.658 kb on - strandat 2259.662 kb on + strandat 2259.681 kb on + strandat 2259.681 kb on + strandat 2259.716 kb on + strandat 2259.727 kb on - strandat 2260.039 kb on - strand, within EX28DRAFT_2236at 2260.044 kb on + strand, within EX28DRAFT_2236at 2260.045 kb on - strand, within EX28DRAFT_2236at 2260.087 kb on + strand, within EX28DRAFT_2236at 2260.288 kb on + strand, within EX28DRAFT_2236at 2260.288 kb on + strand, within EX28DRAFT_2236at 2260.288 kb on + strand, within EX28DRAFT_2236at 2260.288 kb on + strand, within EX28DRAFT_2236at 2260.289 kb on - strand, within EX28DRAFT_2236at 2260.378 kb on + strand, within EX28DRAFT_2236at 2260.379 kb on - strand, within EX28DRAFT_2236at 2260.448 kb on + strand, within EX28DRAFT_2236at 2260.453 kb on - strand, within EX28DRAFT_2236at 2260.456 kb on + strand, within EX28DRAFT_2236at 2260.456 kb on + strand, within EX28DRAFT_2236at 2260.456 kb on + strand, within EX28DRAFT_2236at 2260.456 kb on + strand, within EX28DRAFT_2236at 2260.457 kb on - strand, within EX28DRAFT_2236at 2260.457 kb on - strand, within EX28DRAFT_2236at 2260.457 kb on - strand, within EX28DRAFT_2236at 2260.537 kb on + strand, within EX28DRAFT_2236at 2260.538 kb on - strand, within EX28DRAFT_2236at 2260.719 kb on + strandat 2260.719 kb on + strandat 2260.750 kb on - strandat 2260.912 kb on + strand, within EX28DRAFT_2237at 2261.140 kb on + strand, within EX28DRAFT_2237at 2261.272 kb on + strand, within EX28DRAFT_2237at 2261.309 kb on - strand, within EX28DRAFT_2237at 2261.643 kb on + strand, within EX28DRAFT_2237at 2261.643 kb on + strand, within EX28DRAFT_2237at 2261.644 kb on - strand, within EX28DRAFT_2237at 2261.653 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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2,258,724 + EX28DRAFT_2235 0.49 -1.6
2,258,726 + EX28DRAFT_2235 0.49 +1.3
2,258,815 + EX28DRAFT_2235 0.55 +0.2
2,258,844 + EX28DRAFT_2235 0.57 +1.0
2,258,949 + EX28DRAFT_2235 0.64 -0.3
2,258,949 + EX28DRAFT_2235 0.64 -0.0
2,259,019 - EX28DRAFT_2235 0.69 +0.4
2,259,095 - EX28DRAFT_2235 0.74 +0.0
2,259,112 - EX28DRAFT_2235 0.75 +0.6
2,259,207 + EX28DRAFT_2235 0.81 -0.4
2,259,208 - EX28DRAFT_2235 0.81 -1.2
2,259,268 - EX28DRAFT_2235 0.86 +1.4
2,259,268 - EX28DRAFT_2235 0.86 +1.4
2,259,348 + +0.2
2,259,348 + -1.5
2,259,348 + +0.5
2,259,349 - -0.5
2,259,349 - +0.3
2,259,514 - -0.8
2,259,514 - -0.1
2,259,526 + -0.4
2,259,526 + -0.3
2,259,527 - +3.7
2,259,547 + -0.6
2,259,547 + -2.0
2,259,547 + -0.7
2,259,568 - +0.5
2,259,645 - +0.3
2,259,651 - -0.0
2,259,658 - -0.2
2,259,662 + +0.4
2,259,681 + -0.8
2,259,681 + -0.4
2,259,716 + -0.9
2,259,727 - +0.1
2,260,039 - EX28DRAFT_2236 0.35 -0.2
2,260,044 + EX28DRAFT_2236 0.36 -0.0
2,260,045 - EX28DRAFT_2236 0.36 -0.1
2,260,087 + EX28DRAFT_2236 0.40 -1.6
2,260,288 + EX28DRAFT_2236 0.60 +0.1
2,260,288 + EX28DRAFT_2236 0.60 -1.3
2,260,288 + EX28DRAFT_2236 0.60 -2.2
2,260,288 + EX28DRAFT_2236 0.60 -0.9
2,260,289 - EX28DRAFT_2236 0.60 -0.3
2,260,378 + EX28DRAFT_2236 0.68 -0.2
2,260,379 - EX28DRAFT_2236 0.69 -2.9
2,260,448 + EX28DRAFT_2236 0.75 -4.1
2,260,453 - EX28DRAFT_2236 0.76 -1.3
2,260,456 + EX28DRAFT_2236 0.76 -0.5
2,260,456 + EX28DRAFT_2236 0.76 -1.1
2,260,456 + EX28DRAFT_2236 0.76 -2.3
2,260,456 + EX28DRAFT_2236 0.76 -0.6
2,260,457 - EX28DRAFT_2236 0.76 -1.8
2,260,457 - EX28DRAFT_2236 0.76 -0.8
2,260,457 - EX28DRAFT_2236 0.76 -0.4
2,260,537 + EX28DRAFT_2236 0.84 -1.0
2,260,538 - EX28DRAFT_2236 0.84 -0.2
2,260,719 + -1.2
2,260,719 + +0.7
2,260,750 - +1.2
2,260,912 + EX28DRAFT_2237 0.19 +0.0
2,261,140 + EX28DRAFT_2237 0.41 -1.6
2,261,272 + EX28DRAFT_2237 0.54 -1.0
2,261,309 - EX28DRAFT_2237 0.57 -0.5
2,261,643 + EX28DRAFT_2237 0.89 -0.7
2,261,643 + EX28DRAFT_2237 0.89 -0.6
2,261,644 - EX28DRAFT_2237 0.89 -2.6
2,261,653 + -0.5

Or see this region's nucleotide sequence