Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2235 and EX28DRAFT_2236 are separated by 201 nucleotides EX28DRAFT_2236 and EX28DRAFT_2237 are separated by 9 nucleotides
EX28DRAFT_2235: EX28DRAFT_2235 - ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA, at 2,258,008 to 2,259,480
_2235
EX28DRAFT_2236: EX28DRAFT_2236 - UDP-glucose-4-epimerase GalE, at 2,259,682 to 2,260,698
_2236
EX28DRAFT_2237: EX28DRAFT_2237 - galactose-1-phosphate uridylyltransferase, family 1, at 2,260,708 to 2,261,754
_2237
Position (kb)
2259
2260
2261 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 2258.724 kb on + strand, within EX28DRAFT_2235 at 2258.726 kb on + strand, within EX28DRAFT_2235 at 2258.815 kb on + strand, within EX28DRAFT_2235 at 2258.844 kb on + strand, within EX28DRAFT_2235 at 2258.949 kb on + strand, within EX28DRAFT_2235 at 2258.949 kb on + strand, within EX28DRAFT_2235 at 2259.019 kb on - strand, within EX28DRAFT_2235 at 2259.095 kb on - strand, within EX28DRAFT_2235 at 2259.112 kb on - strand, within EX28DRAFT_2235 at 2259.207 kb on + strand, within EX28DRAFT_2235 at 2259.208 kb on - strand, within EX28DRAFT_2235 at 2259.268 kb on - strand, within EX28DRAFT_2235 at 2259.268 kb on - strand, within EX28DRAFT_2235 at 2259.348 kb on + strand at 2259.348 kb on + strand at 2259.348 kb on + strand at 2259.349 kb on - strand at 2259.349 kb on - strand at 2259.514 kb on - strand at 2259.514 kb on - strand at 2259.526 kb on + strand at 2259.526 kb on + strand at 2259.527 kb on - strand at 2259.547 kb on + strand at 2259.547 kb on + strand at 2259.547 kb on + strand at 2259.568 kb on - strand at 2259.645 kb on - strand at 2259.651 kb on - strand at 2259.658 kb on - strand at 2259.662 kb on + strand at 2259.681 kb on + strand at 2259.681 kb on + strand at 2259.716 kb on + strand at 2259.727 kb on - strand at 2260.039 kb on - strand, within EX28DRAFT_2236 at 2260.044 kb on + strand, within EX28DRAFT_2236 at 2260.045 kb on - strand, within EX28DRAFT_2236 at 2260.087 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.288 kb on + strand, within EX28DRAFT_2236 at 2260.289 kb on - strand, within EX28DRAFT_2236 at 2260.378 kb on + strand, within EX28DRAFT_2236 at 2260.379 kb on - strand, within EX28DRAFT_2236 at 2260.448 kb on + strand, within EX28DRAFT_2236 at 2260.453 kb on - strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.456 kb on + strand, within EX28DRAFT_2236 at 2260.457 kb on - strand, within EX28DRAFT_2236 at 2260.457 kb on - strand, within EX28DRAFT_2236 at 2260.457 kb on - strand, within EX28DRAFT_2236 at 2260.537 kb on + strand, within EX28DRAFT_2236 at 2260.538 kb on - strand, within EX28DRAFT_2236 at 2260.719 kb on + strand at 2260.719 kb on + strand at 2260.750 kb on - strand at 2260.912 kb on + strand, within EX28DRAFT_2237 at 2261.140 kb on + strand, within EX28DRAFT_2237 at 2261.272 kb on + strand, within EX28DRAFT_2237 at 2261.309 kb on - strand, within EX28DRAFT_2237 at 2261.643 kb on + strand, within EX28DRAFT_2237 at 2261.643 kb on + strand, within EX28DRAFT_2237 at 2261.644 kb on - strand, within EX28DRAFT_2237 at 2261.653 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 2,258,724 + EX28DRAFT_2235 0.49 -1.6 2,258,726 + EX28DRAFT_2235 0.49 +1.3 2,258,815 + EX28DRAFT_2235 0.55 +0.2 2,258,844 + EX28DRAFT_2235 0.57 +1.0 2,258,949 + EX28DRAFT_2235 0.64 -0.3 2,258,949 + EX28DRAFT_2235 0.64 -0.0 2,259,019 - EX28DRAFT_2235 0.69 +0.4 2,259,095 - EX28DRAFT_2235 0.74 +0.0 2,259,112 - EX28DRAFT_2235 0.75 +0.6 2,259,207 + EX28DRAFT_2235 0.81 -0.4 2,259,208 - EX28DRAFT_2235 0.81 -1.2 2,259,268 - EX28DRAFT_2235 0.86 +1.4 2,259,268 - EX28DRAFT_2235 0.86 +1.4 2,259,348 + +0.2 2,259,348 + -1.5 2,259,348 + +0.5 2,259,349 - -0.5 2,259,349 - +0.3 2,259,514 - -0.8 2,259,514 - -0.1 2,259,526 + -0.4 2,259,526 + -0.3 2,259,527 - +3.7 2,259,547 + -0.6 2,259,547 + -2.0 2,259,547 + -0.7 2,259,568 - +0.5 2,259,645 - +0.3 2,259,651 - -0.0 2,259,658 - -0.2 2,259,662 + +0.4 2,259,681 + -0.8 2,259,681 + -0.4 2,259,716 + -0.9 2,259,727 - +0.1 2,260,039 - EX28DRAFT_2236 0.35 -0.2 2,260,044 + EX28DRAFT_2236 0.36 -0.0 2,260,045 - EX28DRAFT_2236 0.36 -0.1 2,260,087 + EX28DRAFT_2236 0.40 -1.6 2,260,288 + EX28DRAFT_2236 0.60 +0.1 2,260,288 + EX28DRAFT_2236 0.60 -1.3 2,260,288 + EX28DRAFT_2236 0.60 -2.2 2,260,288 + EX28DRAFT_2236 0.60 -0.9 2,260,289 - EX28DRAFT_2236 0.60 -0.3 2,260,378 + EX28DRAFT_2236 0.68 -0.2 2,260,379 - EX28DRAFT_2236 0.69 -2.9 2,260,448 + EX28DRAFT_2236 0.75 -4.1 2,260,453 - EX28DRAFT_2236 0.76 -1.3 2,260,456 + EX28DRAFT_2236 0.76 -0.5 2,260,456 + EX28DRAFT_2236 0.76 -1.1 2,260,456 + EX28DRAFT_2236 0.76 -2.3 2,260,456 + EX28DRAFT_2236 0.76 -0.6 2,260,457 - EX28DRAFT_2236 0.76 -1.8 2,260,457 - EX28DRAFT_2236 0.76 -0.8 2,260,457 - EX28DRAFT_2236 0.76 -0.4 2,260,537 + EX28DRAFT_2236 0.84 -1.0 2,260,538 - EX28DRAFT_2236 0.84 -0.2 2,260,719 + -1.2 2,260,719 + +0.7 2,260,750 - +1.2 2,260,912 + EX28DRAFT_2237 0.19 +0.0 2,261,140 + EX28DRAFT_2237 0.41 -1.6 2,261,272 + EX28DRAFT_2237 0.54 -1.0 2,261,309 - EX28DRAFT_2237 0.57 -0.5 2,261,643 + EX28DRAFT_2237 0.89 -0.7 2,261,643 + EX28DRAFT_2237 0.89 -0.6 2,261,644 - EX28DRAFT_2237 0.89 -2.6 2,261,653 + -0.5
Or see this region's nucleotide sequence