Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1243

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1240 and EX28DRAFT_1241 are separated by 94 nucleotidesEX28DRAFT_1241 and EX28DRAFT_1242 are separated by 23 nucleotidesEX28DRAFT_1242 and EX28DRAFT_1243 are separated by 21 nucleotidesEX28DRAFT_1243 and EX28DRAFT_1244 are separated by 15 nucleotidesEX28DRAFT_1244 and EX28DRAFT_1245 are separated by 68 nucleotides EX28DRAFT_1240: EX28DRAFT_1240 - Stress-induced bacterial acidophilic repeat motif, at 1,259,330 to 1,259,515 _1240 EX28DRAFT_1241: EX28DRAFT_1241 - Uncharacterized protein conserved in bacteria, at 1,259,610 to 1,260,103 _1241 EX28DRAFT_1242: EX28DRAFT_1242 - hypothetical protein, at 1,260,127 to 1,260,330 _1242 EX28DRAFT_1243: EX28DRAFT_1243 - Uncharacterized protein conserved in bacteria, at 1,260,352 to 1,260,861 _1243 EX28DRAFT_1244: EX28DRAFT_1244 - Mn-containing catalase, at 1,260,877 to 1,261,749 _1244 EX28DRAFT_1245: EX28DRAFT_1245 - Cytochrome bd-type quinol oxidase, subunit 1, at 1,261,818 to 1,263,221 _1245 Position (kb) 1260 1261Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1259.587 kb on + strandat 1260.454 kb on - strand, within EX28DRAFT_1243at 1260.489 kb on + strand, within EX28DRAFT_1243at 1260.655 kb on + strand, within EX28DRAFT_1243at 1260.677 kb on + strand, within EX28DRAFT_1243at 1260.678 kb on - strand, within EX28DRAFT_1243at 1260.685 kb on + strand, within EX28DRAFT_1243at 1260.685 kb on + strand, within EX28DRAFT_1243at 1260.685 kb on + strand, within EX28DRAFT_1243at 1260.687 kb on + strand, within EX28DRAFT_1243at 1260.688 kb on - strand, within EX28DRAFT_1243at 1261.073 kb on + strand, within EX28DRAFT_1244at 1261.073 kb on + strand, within EX28DRAFT_1244at 1261.073 kb on + strand, within EX28DRAFT_1244at 1261.074 kb on - strand, within EX28DRAFT_1244at 1261.203 kb on + strand, within EX28DRAFT_1244at 1261.203 kb on + strand, within EX28DRAFT_1244at 1261.206 kb on + strand, within EX28DRAFT_1244at 1261.206 kb on + strand, within EX28DRAFT_1244at 1261.207 kb on - strand, within EX28DRAFT_1244at 1261.207 kb on - strand, within EX28DRAFT_1244at 1261.207 kb on - strand, within EX28DRAFT_1244at 1261.219 kb on + strand, within EX28DRAFT_1244at 1261.273 kb on + strand, within EX28DRAFT_1244at 1261.273 kb on + strand, within EX28DRAFT_1244at 1261.349 kb on - strand, within EX28DRAFT_1244at 1261.349 kb on - strand, within EX28DRAFT_1244at 1261.516 kb on + strand, within EX28DRAFT_1244at 1261.516 kb on + strand, within EX28DRAFT_1244at 1261.516 kb on + strand, within EX28DRAFT_1244at 1261.517 kb on - strand, within EX28DRAFT_1244at 1261.519 kb on + strand, within EX28DRAFT_1244at 1261.520 kb on - strand, within EX28DRAFT_1244at 1261.520 kb on - strand, within EX28DRAFT_1244at 1261.520 kb on - strand, within EX28DRAFT_1244at 1261.524 kb on + strand, within EX28DRAFT_1244at 1261.524 kb on + strand, within EX28DRAFT_1244at 1261.524 kb on + strand, within EX28DRAFT_1244at 1261.525 kb on - strand, within EX28DRAFT_1244at 1261.525 kb on - strand, within EX28DRAFT_1244at 1261.734 kb on + strandat 1261.741 kb on - strandat 1261.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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1,259,587 + -1.6
1,260,454 - EX28DRAFT_1243 0.20 -0.2
1,260,489 + EX28DRAFT_1243 0.27 +0.6
1,260,655 + EX28DRAFT_1243 0.59 -1.5
1,260,677 + EX28DRAFT_1243 0.64 -1.8
1,260,678 - EX28DRAFT_1243 0.64 -1.3
1,260,685 + EX28DRAFT_1243 0.65 -1.4
1,260,685 + EX28DRAFT_1243 0.65 +0.6
1,260,685 + EX28DRAFT_1243 0.65 +0.0
1,260,687 + EX28DRAFT_1243 0.66 -0.5
1,260,688 - EX28DRAFT_1243 0.66 -0.6
1,261,073 + EX28DRAFT_1244 0.22 +2.8
1,261,073 + EX28DRAFT_1244 0.22 -0.0
1,261,073 + EX28DRAFT_1244 0.22 -0.3
1,261,074 - EX28DRAFT_1244 0.23 -1.0
1,261,203 + EX28DRAFT_1244 0.37 -0.3
1,261,203 + EX28DRAFT_1244 0.37 -0.7
1,261,206 + EX28DRAFT_1244 0.38 +3.6
1,261,206 + EX28DRAFT_1244 0.38 +0.2
1,261,207 - EX28DRAFT_1244 0.38 +0.7
1,261,207 - EX28DRAFT_1244 0.38 -0.7
1,261,207 - EX28DRAFT_1244 0.38 -1.7
1,261,219 + EX28DRAFT_1244 0.39 -1.0
1,261,273 + EX28DRAFT_1244 0.45 -0.6
1,261,273 + EX28DRAFT_1244 0.45 -0.6
1,261,349 - EX28DRAFT_1244 0.54 +0.7
1,261,349 - EX28DRAFT_1244 0.54 -0.5
1,261,516 + EX28DRAFT_1244 0.73 +0.3
1,261,516 + EX28DRAFT_1244 0.73 +0.4
1,261,516 + EX28DRAFT_1244 0.73 -0.9
1,261,517 - EX28DRAFT_1244 0.73 -0.6
1,261,519 + EX28DRAFT_1244 0.74 +0.3
1,261,520 - EX28DRAFT_1244 0.74 +0.6
1,261,520 - EX28DRAFT_1244 0.74 -1.1
1,261,520 - EX28DRAFT_1244 0.74 +1.3
1,261,524 + EX28DRAFT_1244 0.74 -1.7
1,261,524 + EX28DRAFT_1244 0.74 -0.8
1,261,524 + EX28DRAFT_1244 0.74 -0.4
1,261,525 - EX28DRAFT_1244 0.74 -1.2
1,261,525 - EX28DRAFT_1244 0.74 +0.4
1,261,734 + -0.0
1,261,741 - -0.5
1,261,741 - +1.4

Or see this region's nucleotide sequence