Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0991

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0990 and EX28DRAFT_0991 are separated by 34 nucleotidesEX28DRAFT_0991 and EX28DRAFT_0992 are separated by 155 nucleotides EX28DRAFT_0990: EX28DRAFT_0990 - Outer membrane protein G (OmpG), at 992,130 to 993,044 _0990 EX28DRAFT_0991: EX28DRAFT_0991 - transcriptional regulator, LacI family, at 993,079 to 994,089 _0991 EX28DRAFT_0992: EX28DRAFT_0992 - Predicted ATPase, at 994,245 to 995,642 _0992 Position (kb) 993 994 995Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 992.113 kb on + strandat 992.116 kb on - strandat 992.136 kb on - strandat 992.144 kb on - strandat 992.235 kb on + strand, within EX28DRAFT_0990at 992.281 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.283 kb on + strand, within EX28DRAFT_0990at 992.284 kb on - strand, within EX28DRAFT_0990at 992.373 kb on - strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.413 kb on + strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.414 kb on - strand, within EX28DRAFT_0990at 992.490 kb on - strand, within EX28DRAFT_0990at 992.562 kb on - strand, within EX28DRAFT_0990at 992.604 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.750 kb on + strand, within EX28DRAFT_0990at 992.751 kb on - strand, within EX28DRAFT_0990at 992.788 kb on - strand, within EX28DRAFT_0990at 992.795 kb on + strand, within EX28DRAFT_0990at 992.796 kb on - strand, within EX28DRAFT_0990at 992.826 kb on + strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.920 kb on - strand, within EX28DRAFT_0990at 992.925 kb on + strand, within EX28DRAFT_0990at 992.926 kb on - strand, within EX28DRAFT_0990at 992.961 kb on + strandat 993.151 kb on - strandat 993.322 kb on + strand, within EX28DRAFT_0991at 993.322 kb on + strand, within EX28DRAFT_0991at 993.322 kb on + strand, within EX28DRAFT_0991at 993.323 kb on - strand, within EX28DRAFT_0991at 993.377 kb on - strand, within EX28DRAFT_0991at 993.712 kb on + strand, within EX28DRAFT_0991at 993.713 kb on - strand, within EX28DRAFT_0991at 993.791 kb on - strand, within EX28DRAFT_0991at 993.795 kb on + strand, within EX28DRAFT_0991at 994.073 kb on + strandat 994.073 kb on + strandat 994.074 kb on - strandat 994.074 kb on - strandat 994.074 kb on - strandat 994.089 kb on + strandat 994.089 kb on + strandat 994.157 kb on + strandat 994.157 kb on + strandat 994.157 kb on + strandat 994.485 kb on + strand, within EX28DRAFT_0992at 994.509 kb on + strand, within EX28DRAFT_0992at 995.029 kb on - strand, within EX28DRAFT_0992at 995.031 kb on + strand, within EX28DRAFT_0992at 995.031 kb on + strand, within EX28DRAFT_0992at 995.059 kb on - strand, within EX28DRAFT_0992

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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992,113 + +0.3
992,116 - +0.4
992,136 - +2.1
992,144 - -0.8
992,235 + EX28DRAFT_0990 0.11 +0.1
992,281 + EX28DRAFT_0990 0.17 -0.5
992,283 + EX28DRAFT_0990 0.17 -0.7
992,283 + EX28DRAFT_0990 0.17 -0.3
992,283 + EX28DRAFT_0990 0.17 +1.4
992,283 + EX28DRAFT_0990 0.17 -0.5
992,284 - EX28DRAFT_0990 0.17 -2.6
992,373 - EX28DRAFT_0990 0.27 -3.0
992,413 + EX28DRAFT_0990 0.31 -0.0
992,413 + EX28DRAFT_0990 0.31 -1.7
992,414 - EX28DRAFT_0990 0.31 -0.3
992,414 - EX28DRAFT_0990 0.31 +0.1
992,490 - EX28DRAFT_0990 0.39 +0.5
992,562 - EX28DRAFT_0990 0.47 +0.2
992,604 + EX28DRAFT_0990 0.52 -0.8
992,750 + EX28DRAFT_0990 0.68 +0.8
992,750 + EX28DRAFT_0990 0.68 +1.2
992,751 - EX28DRAFT_0990 0.68 +1.6
992,788 - EX28DRAFT_0990 0.72 +0.2
992,795 + EX28DRAFT_0990 0.73 +2.6
992,796 - EX28DRAFT_0990 0.73 +0.2
992,826 + EX28DRAFT_0990 0.76 -0.4
992,920 - EX28DRAFT_0990 0.86 -0.9
992,920 - EX28DRAFT_0990 0.86 -0.4
992,920 - EX28DRAFT_0990 0.86 -0.2
992,925 + EX28DRAFT_0990 0.87 +0.6
992,926 - EX28DRAFT_0990 0.87 -1.0
992,961 + -0.5
993,151 - +1.5
993,322 + EX28DRAFT_0991 0.24 -0.4
993,322 + EX28DRAFT_0991 0.24 -1.2
993,322 + EX28DRAFT_0991 0.24 -3.2
993,323 - EX28DRAFT_0991 0.24 -3.3
993,377 - EX28DRAFT_0991 0.29 -2.1
993,712 + EX28DRAFT_0991 0.63 +0.4
993,713 - EX28DRAFT_0991 0.63 -3.5
993,791 - EX28DRAFT_0991 0.70 -1.4
993,795 + EX28DRAFT_0991 0.71 -0.9
994,073 + -3.0
994,073 + -1.8
994,074 - -3.1
994,074 - -2.9
994,074 - -0.6
994,089 + -0.2
994,089 + -2.2
994,157 + +0.8
994,157 + -0.2
994,157 + +0.0
994,485 + EX28DRAFT_0992 0.17 +1.1
994,509 + EX28DRAFT_0992 0.19 -0.1
995,029 - EX28DRAFT_0992 0.56 +0.6
995,031 + EX28DRAFT_0992 0.56 -1.1
995,031 + EX28DRAFT_0992 0.56 -0.1
995,059 - EX28DRAFT_0992 0.58 -1.2

Or see this region's nucleotide sequence