Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0950

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0949 and EX28DRAFT_0950 are separated by 37 nucleotidesEX28DRAFT_0950 and EX28DRAFT_0951 are separated by 164 nucleotides EX28DRAFT_0949: EX28DRAFT_0949 - aconitate hydratase 1, at 948,141 to 950,816 _0949 EX28DRAFT_0950: EX28DRAFT_0950 - GTP cyclohydrolase II, at 950,854 to 951,444 _0950 EX28DRAFT_0951: EX28DRAFT_0951 - Membrane-associated phospholipid phosphatase, at 951,609 to 952,409 _0951 Position (kb) 950 951 952Strain fitness (log2 ratio) -2 -1 0 1 2at 949.888 kb on - strand, within EX28DRAFT_0949at 949.898 kb on + strand, within EX28DRAFT_0949at 949.899 kb on - strand, within EX28DRAFT_0949at 950.028 kb on - strand, within EX28DRAFT_0949at 950.031 kb on + strand, within EX28DRAFT_0949at 950.032 kb on - strand, within EX28DRAFT_0949at 950.032 kb on - strand, within EX28DRAFT_0949at 950.032 kb on - strand, within EX28DRAFT_0949at 950.055 kb on + strand, within EX28DRAFT_0949at 950.055 kb on + strand, within EX28DRAFT_0949at 950.055 kb on + strand, within EX28DRAFT_0949at 950.056 kb on - strand, within EX28DRAFT_0949at 950.056 kb on - strand, within EX28DRAFT_0949at 950.058 kb on - strand, within EX28DRAFT_0949at 950.132 kb on - strand, within EX28DRAFT_0949at 950.168 kb on + strand, within EX28DRAFT_0949at 950.168 kb on + strand, within EX28DRAFT_0949at 950.169 kb on - strand, within EX28DRAFT_0949at 950.169 kb on - strand, within EX28DRAFT_0949at 950.169 kb on - strand, within EX28DRAFT_0949at 950.187 kb on - strand, within EX28DRAFT_0949at 950.187 kb on - strand, within EX28DRAFT_0949at 950.391 kb on + strand, within EX28DRAFT_0949at 950.392 kb on - strand, within EX28DRAFT_0949at 950.392 kb on - strand, within EX28DRAFT_0949at 950.409 kb on + strand, within EX28DRAFT_0949at 950.410 kb on - strand, within EX28DRAFT_0949at 950.454 kb on + strand, within EX28DRAFT_0949at 950.540 kb on + strand, within EX28DRAFT_0949at 950.540 kb on + strand, within EX28DRAFT_0949at 950.606 kb on + strandat 950.621 kb on + strandat 950.763 kb on + strandat 950.763 kb on + strandat 950.764 kb on - strandat 950.764 kb on - strandat 950.785 kb on + strandat 950.786 kb on - strandat 950.790 kb on + strandat 950.791 kb on - strandat 950.849 kb on + strandat 950.850 kb on - strandat 950.853 kb on - strandat 951.553 kb on + strandat 951.553 kb on + strandat 951.553 kb on + strandat 951.553 kb on + strandat 951.553 kb on + strandat 951.554 kb on - strandat 951.554 kb on - strandat 951.554 kb on - strandat 951.554 kb on - strandat 951.555 kb on + strandat 951.555 kb on + strandat 951.555 kb on + strandat 951.556 kb on - strandat 951.582 kb on + strandat 951.609 kb on - strandat 951.609 kb on - strandat 951.692 kb on + strand, within EX28DRAFT_0951at 951.692 kb on + strand, within EX28DRAFT_0951at 951.746 kb on + strand, within EX28DRAFT_0951at 951.747 kb on - strand, within EX28DRAFT_0951at 951.747 kb on - strand, within EX28DRAFT_0951at 951.755 kb on + strand, within EX28DRAFT_0951at 951.803 kb on + strand, within EX28DRAFT_0951at 951.881 kb on + strand, within EX28DRAFT_0951at 952.013 kb on - strand, within EX28DRAFT_0951at 952.067 kb on + strand, within EX28DRAFT_0951at 952.130 kb on + strand, within EX28DRAFT_0951at 952.418 kb on - strandat 952.435 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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949,888 - EX28DRAFT_0949 0.65 -1.2
949,898 + EX28DRAFT_0949 0.66 +0.7
949,899 - EX28DRAFT_0949 0.66 +0.9
950,028 - EX28DRAFT_0949 0.71 +0.6
950,031 + EX28DRAFT_0949 0.71 +1.7
950,032 - EX28DRAFT_0949 0.71 -0.3
950,032 - EX28DRAFT_0949 0.71 +0.7
950,032 - EX28DRAFT_0949 0.71 -0.2
950,055 + EX28DRAFT_0949 0.72 -0.5
950,055 + EX28DRAFT_0949 0.72 +0.0
950,055 + EX28DRAFT_0949 0.72 -0.2
950,056 - EX28DRAFT_0949 0.72 +0.3
950,056 - EX28DRAFT_0949 0.72 -0.9
950,058 - EX28DRAFT_0949 0.72 -0.6
950,132 - EX28DRAFT_0949 0.74 +0.0
950,168 + EX28DRAFT_0949 0.76 +0.4
950,168 + EX28DRAFT_0949 0.76 -0.5
950,169 - EX28DRAFT_0949 0.76 +1.4
950,169 - EX28DRAFT_0949 0.76 -0.8
950,169 - EX28DRAFT_0949 0.76 +0.3
950,187 - EX28DRAFT_0949 0.76 +0.1
950,187 - EX28DRAFT_0949 0.76 -1.0
950,391 + EX28DRAFT_0949 0.84 +0.3
950,392 - EX28DRAFT_0949 0.84 -1.3
950,392 - EX28DRAFT_0949 0.84 +0.9
950,409 + EX28DRAFT_0949 0.85 -0.7
950,410 - EX28DRAFT_0949 0.85 -1.2
950,454 + EX28DRAFT_0949 0.86 -0.3
950,540 + EX28DRAFT_0949 0.90 +0.0
950,540 + EX28DRAFT_0949 0.90 +0.9
950,606 + -1.0
950,621 + -0.1
950,763 + -0.7
950,763 + +0.2
950,764 - -1.7
950,764 - +0.4
950,785 + -0.0
950,786 - +0.6
950,790 + +1.4
950,791 - +0.6
950,849 + -1.0
950,850 - -0.5
950,853 - +0.8
951,553 + +0.1
951,553 + -0.7
951,553 + -0.2
951,553 + -1.2
951,553 + +1.4
951,554 - +0.1
951,554 - +1.9
951,554 - +1.0
951,554 - +0.7
951,555 + +0.3
951,555 + -2.2
951,555 + -0.8
951,556 - -0.1
951,582 + -2.0
951,609 - +1.5
951,609 - -0.1
951,692 + EX28DRAFT_0951 0.10 +0.0
951,692 + EX28DRAFT_0951 0.10 +0.1
951,746 + EX28DRAFT_0951 0.17 -1.4
951,747 - EX28DRAFT_0951 0.17 -0.5
951,747 - EX28DRAFT_0951 0.17 +1.4
951,755 + EX28DRAFT_0951 0.18 +0.8
951,803 + EX28DRAFT_0951 0.24 +1.6
951,881 + EX28DRAFT_0951 0.34 +0.9
952,013 - EX28DRAFT_0951 0.50 +0.3
952,067 + EX28DRAFT_0951 0.57 -0.4
952,130 + EX28DRAFT_0951 0.65 +0.4
952,418 - -0.8
952,435 + -0.6

Or see this region's nucleotide sequence