Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0942 and EX28DRAFT_0943 are separated by 251 nucleotides EX28DRAFT_0943 and EX28DRAFT_0944 are separated by 34 nucleotides EX28DRAFT_0944 and EX28DRAFT_0945 are separated by 399 nucleotides
EX28DRAFT_0942: EX28DRAFT_0942 - Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 940,586 to 941,347
_0942
EX28DRAFT_0943: EX28DRAFT_0943 - Periplasmic serine proteases (ClpP class), at 941,599 to 942,645
_0943
EX28DRAFT_0944: EX28DRAFT_0944 - Protein of unknown function (DUF2498), at 942,680 to 942,931
_0944
EX28DRAFT_0945: EX28DRAFT_0945 - DNA topoisomerase I, bacterial, at 943,331 to 945,928
_0945
Position (kb) 941
942
943 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 940.607 kb on - strand at 940.674 kb on + strand, within EX28DRAFT_0942 at 940.674 kb on + strand, within EX28DRAFT_0942 at 940.684 kb on + strand, within EX28DRAFT_0942 at 940.685 kb on - strand, within EX28DRAFT_0942 at 940.685 kb on - strand, within EX28DRAFT_0942 at 940.854 kb on + strand, within EX28DRAFT_0942 at 941.135 kb on + strand, within EX28DRAFT_0942 at 941.135 kb on + strand, within EX28DRAFT_0942 at 941.149 kb on - strand, within EX28DRAFT_0942 at 941.305 kb on + strand at 941.305 kb on + strand at 941.340 kb on + strand at 941.386 kb on + strand at 941.386 kb on + strand at 941.388 kb on + strand at 941.421 kb on + strand at 941.425 kb on - strand at 941.475 kb on + strand at 941.557 kb on - strand at 941.606 kb on + strand at 941.607 kb on - strand at 941.747 kb on - strand, within EX28DRAFT_0943 at 941.748 kb on + strand, within EX28DRAFT_0943 at 941.749 kb on - strand, within EX28DRAFT_0943 at 941.749 kb on - strand, within EX28DRAFT_0943 at 941.787 kb on + strand, within EX28DRAFT_0943 at 942.136 kb on + strand, within EX28DRAFT_0943 at 942.136 kb on + strand, within EX28DRAFT_0943 at 942.137 kb on - strand, within EX28DRAFT_0943 at 942.280 kb on + strand, within EX28DRAFT_0943 at 942.387 kb on + strand, within EX28DRAFT_0943 at 942.506 kb on + strand, within EX28DRAFT_0943 at 942.662 kb on + strand at 942.662 kb on + strand at 942.724 kb on - strand, within EX28DRAFT_0944 at 942.787 kb on - strand, within EX28DRAFT_0944 at 942.787 kb on - strand, within EX28DRAFT_0944 at 942.815 kb on - strand, within EX28DRAFT_0944 at 942.815 kb on - strand, within EX28DRAFT_0944 at 942.854 kb on - strand, within EX28DRAFT_0944 at 942.910 kb on + strand at 942.911 kb on - strand at 942.923 kb on - strand at 942.956 kb on + strand at 942.956 kb on + strand at 942.956 kb on + strand at 942.956 kb on + strand at 942.957 kb on - strand at 942.957 kb on - strand at 942.957 kb on - strand at 942.997 kb on - strand at 943.052 kb on - strand at 943.074 kb on + strand at 943.082 kb on - strand at 943.231 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 940,607 - -1.7 940,674 + EX28DRAFT_0942 0.12 +1.1 940,674 + EX28DRAFT_0942 0.12 +0.2 940,684 + EX28DRAFT_0942 0.13 +2.4 940,685 - EX28DRAFT_0942 0.13 -0.1 940,685 - EX28DRAFT_0942 0.13 +0.4 940,854 + EX28DRAFT_0942 0.35 -0.8 941,135 + EX28DRAFT_0942 0.72 -1.6 941,135 + EX28DRAFT_0942 0.72 +1.2 941,149 - EX28DRAFT_0942 0.74 +0.4 941,305 + -0.5 941,305 + -0.6 941,340 + -1.3 941,386 + -3.1 941,386 + +0.2 941,388 + +1.8 941,421 + +0.3 941,425 - -0.8 941,475 + +0.5 941,557 - -1.2 941,606 + +1.1 941,607 - +0.1 941,747 - EX28DRAFT_0943 0.14 -1.6 941,748 + EX28DRAFT_0943 0.14 +0.3 941,749 - EX28DRAFT_0943 0.14 -1.2 941,749 - EX28DRAFT_0943 0.14 -1.6 941,787 + EX28DRAFT_0943 0.18 -0.5 942,136 + EX28DRAFT_0943 0.51 -3.0 942,136 + EX28DRAFT_0943 0.51 -0.6 942,137 - EX28DRAFT_0943 0.51 -1.0 942,280 + EX28DRAFT_0943 0.65 -0.2 942,387 + EX28DRAFT_0943 0.75 +0.2 942,506 + EX28DRAFT_0943 0.87 +0.2 942,662 + +0.3 942,662 + -1.0 942,724 - EX28DRAFT_0944 0.17 +0.4 942,787 - EX28DRAFT_0944 0.42 -1.7 942,787 - EX28DRAFT_0944 0.42 -1.1 942,815 - EX28DRAFT_0944 0.54 +0.0 942,815 - EX28DRAFT_0944 0.54 -2.5 942,854 - EX28DRAFT_0944 0.69 -0.3 942,910 + +0.1 942,911 - +0.3 942,923 - -1.7 942,956 + -0.7 942,956 + -2.0 942,956 + +0.0 942,956 + +0.7 942,957 - -0.3 942,957 - -1.4 942,957 - -0.2 942,997 - +1.4 943,052 - +0.1 943,074 + +0.0 943,082 - +3.1 943,231 + +1.8
Or see this region's nucleotide sequence