Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0856 and EX28DRAFT_0857 are separated by 652 nucleotides EX28DRAFT_0857 and EX28DRAFT_0858 are separated by 157 nucleotides
EX28DRAFT_0856: EX28DRAFT_0856 - Transcriptional regulators, at 868,464 to 868,907
_0856
EX28DRAFT_0857: EX28DRAFT_0857 - tRNA, at 869,560 to 869,641
_0857
EX28DRAFT_0858: EX28DRAFT_0858 - formyltetrahydrofolate deformylase, at 869,799 to 870,641
_0858
Position (kb) 869
870 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 868.658 kb on + strand, within EX28DRAFT_0856 at 868.707 kb on - strand, within EX28DRAFT_0856 at 868.719 kb on + strand, within EX28DRAFT_0856 at 868.719 kb on + strand, within EX28DRAFT_0856 at 868.744 kb on + strand, within EX28DRAFT_0856 at 868.744 kb on + strand, within EX28DRAFT_0856 at 868.856 kb on + strand, within EX28DRAFT_0856 at 869.606 kb on - strand, within EX28DRAFT_0857 at 869.715 kb on - strand at 869.801 kb on - strand at 869.920 kb on + strand, within EX28DRAFT_0858 at 869.920 kb on + strand, within EX28DRAFT_0858 at 869.921 kb on - strand, within EX28DRAFT_0858 at 869.921 kb on - strand, within EX28DRAFT_0858 at 869.986 kb on + strand, within EX28DRAFT_0858 at 870.092 kb on + strand, within EX28DRAFT_0858 at 870.154 kb on + strand, within EX28DRAFT_0858 at 870.154 kb on + strand, within EX28DRAFT_0858 at 870.154 kb on + strand, within EX28DRAFT_0858 at 870.155 kb on - strand, within EX28DRAFT_0858 at 870.623 kb on + strand at 870.630 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 868,658 + EX28DRAFT_0856 0.44 +0.6 868,707 - EX28DRAFT_0856 0.55 +0.9 868,719 + EX28DRAFT_0856 0.57 -0.5 868,719 + EX28DRAFT_0856 0.57 -0.8 868,744 + EX28DRAFT_0856 0.63 +1.4 868,744 + EX28DRAFT_0856 0.63 +0.6 868,856 + EX28DRAFT_0856 0.88 +0.2 869,606 - EX28DRAFT_0857 0.56 -3.1 869,715 - +0.1 869,801 - -0.5 869,920 + EX28DRAFT_0858 0.14 -0.3 869,920 + EX28DRAFT_0858 0.14 -0.4 869,921 - EX28DRAFT_0858 0.14 +0.3 869,921 - EX28DRAFT_0858 0.14 +1.7 869,986 + EX28DRAFT_0858 0.22 -0.8 870,092 + EX28DRAFT_0858 0.35 -2.0 870,154 + EX28DRAFT_0858 0.42 -0.5 870,154 + EX28DRAFT_0858 0.42 -2.5 870,154 + EX28DRAFT_0858 0.42 -0.2 870,155 - EX28DRAFT_0858 0.42 +1.0 870,623 + +0.4 870,630 + +0.3
Or see this region's nucleotide sequence