Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0660

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0658 and EX28DRAFT_0659 are separated by 2 nucleotidesEX28DRAFT_0659 and EX28DRAFT_0660 are separated by 123 nucleotidesEX28DRAFT_0660 and EX28DRAFT_0661 overlap by 4 nucleotidesEX28DRAFT_0661 and EX28DRAFT_0662 are separated by 4 nucleotides EX28DRAFT_0658: EX28DRAFT_0658 - Flagellar transcriptional activator (FlhD), at 653,152 to 653,502 _0658 EX28DRAFT_0659: EX28DRAFT_0659 - Flagellar transcriptional activator (FlhC), at 653,505 to 654,083 _0659 EX28DRAFT_0660: EX28DRAFT_0660 - flagellar motor stator protein MotA, at 654,207 to 655,094 _0660 EX28DRAFT_0661: EX28DRAFT_0661 - Flagellar motor protein, at 655,091 to 656,020 _0661 EX28DRAFT_0662: EX28DRAFT_0662 - Chemotaxis protein histidine kinase and related kinases, at 656,025 to 658,061 _0662 Position (kb) 654 655 656Strain fitness (log2 ratio) -2 -1 0 1 2 3at 653.227 kb on - strand, within EX28DRAFT_0658at 653.227 kb on - strand, within EX28DRAFT_0658at 653.500 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.542 kb on + strandat 653.564 kb on + strand, within EX28DRAFT_0659at 653.581 kb on + strand, within EX28DRAFT_0659at 653.634 kb on + strand, within EX28DRAFT_0659at 653.635 kb on - strand, within EX28DRAFT_0659at 653.645 kb on - strand, within EX28DRAFT_0659at 653.651 kb on + strand, within EX28DRAFT_0659at 653.652 kb on - strand, within EX28DRAFT_0659at 653.697 kb on - strand, within EX28DRAFT_0659at 653.735 kb on + strand, within EX28DRAFT_0659at 653.736 kb on - strand, within EX28DRAFT_0659at 653.736 kb on - strand, within EX28DRAFT_0659at 653.748 kb on + strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.749 kb on - strand, within EX28DRAFT_0659at 653.800 kb on - strand, within EX28DRAFT_0659at 653.808 kb on + strand, within EX28DRAFT_0659at 653.809 kb on - strand, within EX28DRAFT_0659at 653.809 kb on - strand, within EX28DRAFT_0659at 653.936 kb on + strand, within EX28DRAFT_0659at 653.936 kb on + strand, within EX28DRAFT_0659at 653.936 kb on + strand, within EX28DRAFT_0659at 653.937 kb on - strand, within EX28DRAFT_0659at 653.976 kb on - strand, within EX28DRAFT_0659at 653.976 kb on - strand, within EX28DRAFT_0659at 653.980 kb on + strand, within EX28DRAFT_0659at 653.980 kb on + strand, within EX28DRAFT_0659at 653.981 kb on - strand, within EX28DRAFT_0659at 654.004 kb on + strand, within EX28DRAFT_0659at 654.014 kb on + strand, within EX28DRAFT_0659at 654.041 kb on + strandat 654.123 kb on + strandat 654.123 kb on + strandat 654.182 kb on + strandat 654.213 kb on - strandat 654.213 kb on - strandat 654.218 kb on - strandat 654.220 kb on + strandat 654.220 kb on + strandat 654.220 kb on + strandat 654.221 kb on - strandat 654.221 kb on - strandat 654.232 kb on + strandat 654.232 kb on + strandat 654.258 kb on + strandat 654.291 kb on + strandat 654.292 kb on - strandat 654.292 kb on - strandat 654.308 kb on + strand, within EX28DRAFT_0660at 654.309 kb on - strand, within EX28DRAFT_0660at 654.309 kb on - strand, within EX28DRAFT_0660at 654.311 kb on + strand, within EX28DRAFT_0660at 654.342 kb on - strand, within EX28DRAFT_0660at 654.359 kb on + strand, within EX28DRAFT_0660at 654.360 kb on - strand, within EX28DRAFT_0660at 654.414 kb on + strand, within EX28DRAFT_0660at 654.414 kb on + strand, within EX28DRAFT_0660at 654.425 kb on + strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.426 kb on - strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.429 kb on + strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.430 kb on - strand, within EX28DRAFT_0660at 654.431 kb on + strand, within EX28DRAFT_0660at 654.431 kb on + strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.432 kb on - strand, within EX28DRAFT_0660at 654.510 kb on + strand, within EX28DRAFT_0660at 654.544 kb on - strand, within EX28DRAFT_0660at 654.623 kb on + strand, within EX28DRAFT_0660at 654.624 kb on - strand, within EX28DRAFT_0660at 654.624 kb on - strand, within EX28DRAFT_0660at 654.843 kb on - strand, within EX28DRAFT_0660at 654.992 kb on + strand, within EX28DRAFT_0660at 655.192 kb on + strand, within EX28DRAFT_0661at 655.275 kb on - strand, within EX28DRAFT_0661at 655.604 kb on + strand, within EX28DRAFT_0661at 655.774 kb on - strand, within EX28DRAFT_0661at 655.881 kb on + strand, within EX28DRAFT_0661at 656.037 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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653,227 - EX28DRAFT_0658 0.21 -0.6
653,227 - EX28DRAFT_0658 0.21 -1.1
653,500 + -0.2
653,542 + -0.2
653,542 + -0.1
653,542 + -0.0
653,542 + -0.1
653,542 + -0.0
653,542 + +1.7
653,564 + EX28DRAFT_0659 0.10 -0.4
653,581 + EX28DRAFT_0659 0.13 -0.4
653,634 + EX28DRAFT_0659 0.22 +1.5
653,635 - EX28DRAFT_0659 0.22 +0.3
653,645 - EX28DRAFT_0659 0.24 -0.7
653,651 + EX28DRAFT_0659 0.25 -0.3
653,652 - EX28DRAFT_0659 0.25 -0.6
653,697 - EX28DRAFT_0659 0.33 +0.2
653,735 + EX28DRAFT_0659 0.40 +0.3
653,736 - EX28DRAFT_0659 0.40 -2.0
653,736 - EX28DRAFT_0659 0.40 -1.7
653,748 + EX28DRAFT_0659 0.42 -0.4
653,749 - EX28DRAFT_0659 0.42 -1.2
653,749 - EX28DRAFT_0659 0.42 -0.8
653,749 - EX28DRAFT_0659 0.42 -0.9
653,749 - EX28DRAFT_0659 0.42 -0.2
653,749 - EX28DRAFT_0659 0.42 -0.8
653,800 - EX28DRAFT_0659 0.51 +0.0
653,808 + EX28DRAFT_0659 0.52 -0.4
653,809 - EX28DRAFT_0659 0.53 +0.2
653,809 - EX28DRAFT_0659 0.53 +0.5
653,936 + EX28DRAFT_0659 0.74 +0.4
653,936 + EX28DRAFT_0659 0.74 -2.4
653,936 + EX28DRAFT_0659 0.74 +0.4
653,937 - EX28DRAFT_0659 0.75 +2.3
653,976 - EX28DRAFT_0659 0.81 -1.0
653,976 - EX28DRAFT_0659 0.81 -0.4
653,980 + EX28DRAFT_0659 0.82 -0.2
653,980 + EX28DRAFT_0659 0.82 -0.6
653,981 - EX28DRAFT_0659 0.82 +0.0
654,004 + EX28DRAFT_0659 0.86 -0.7
654,014 + EX28DRAFT_0659 0.88 -0.7
654,041 + +0.3
654,123 + +1.4
654,123 + -1.1
654,182 + +1.0
654,213 - +0.8
654,213 - -0.5
654,218 - -0.0
654,220 + -0.4
654,220 + +1.1
654,220 + +0.6
654,221 - -0.8
654,221 - +0.3
654,232 + -0.7
654,232 + +1.1
654,258 + -0.3
654,291 + +0.8
654,292 - -1.0
654,292 - -1.5
654,308 + EX28DRAFT_0660 0.11 +0.0
654,309 - EX28DRAFT_0660 0.11 +1.1
654,309 - EX28DRAFT_0660 0.11 -0.3
654,311 + EX28DRAFT_0660 0.12 +0.0
654,342 - EX28DRAFT_0660 0.15 -1.4
654,359 + EX28DRAFT_0660 0.17 +0.8
654,360 - EX28DRAFT_0660 0.17 -1.0
654,414 + EX28DRAFT_0660 0.23 +0.7
654,414 + EX28DRAFT_0660 0.23 -0.7
654,425 + EX28DRAFT_0660 0.25 +0.4
654,426 - EX28DRAFT_0660 0.25 +1.1
654,426 - EX28DRAFT_0660 0.25 -0.3
654,426 - EX28DRAFT_0660 0.25 -0.9
654,426 - EX28DRAFT_0660 0.25 -1.0
654,426 - EX28DRAFT_0660 0.25 -1.1
654,429 + EX28DRAFT_0660 0.25 -1.3
654,429 + EX28DRAFT_0660 0.25 +0.5
654,429 + EX28DRAFT_0660 0.25 -0.6
654,429 + EX28DRAFT_0660 0.25 -0.7
654,430 - EX28DRAFT_0660 0.25 +0.1
654,430 - EX28DRAFT_0660 0.25 +0.4
654,430 - EX28DRAFT_0660 0.25 -1.1
654,430 - EX28DRAFT_0660 0.25 -0.5
654,431 + EX28DRAFT_0660 0.25 +1.8
654,431 + EX28DRAFT_0660 0.25 +3.3
654,432 - EX28DRAFT_0660 0.25 -0.2
654,432 - EX28DRAFT_0660 0.25 +0.6
654,432 - EX28DRAFT_0660 0.25 -0.7
654,432 - EX28DRAFT_0660 0.25 -0.3
654,510 + EX28DRAFT_0660 0.34 +2.8
654,544 - EX28DRAFT_0660 0.38 -1.3
654,623 + EX28DRAFT_0660 0.47 -0.1
654,624 - EX28DRAFT_0660 0.47 +0.5
654,624 - EX28DRAFT_0660 0.47 +1.5
654,843 - EX28DRAFT_0660 0.72 -0.0
654,992 + EX28DRAFT_0660 0.88 -0.6
655,192 + EX28DRAFT_0661 0.11 -0.4
655,275 - EX28DRAFT_0661 0.20 -1.0
655,604 + EX28DRAFT_0661 0.55 -0.9
655,774 - EX28DRAFT_0661 0.73 -0.4
655,881 + EX28DRAFT_0661 0.85 +0.2
656,037 - -0.3

Or see this region's nucleotide sequence