Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0610

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0609 and EX28DRAFT_0610 are separated by 4 nucleotidesEX28DRAFT_0610 and EX28DRAFT_0611 are separated by 106 nucleotides EX28DRAFT_0609: EX28DRAFT_0609 - flagellar motor switch protein FliM, at 607,412 to 608,416 _0609 EX28DRAFT_0610: EX28DRAFT_0610 - Flagellar basal body-associated protein, at 608,421 to 608,891 _0610 EX28DRAFT_0611: EX28DRAFT_0611 - Flagellar hook-length control protein, at 608,998 to 610,233 _0611 Position (kb) 608 609Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 607.541 kb on - strand, within EX28DRAFT_0609at 607.583 kb on + strand, within EX28DRAFT_0609at 607.846 kb on + strand, within EX28DRAFT_0609at 607.853 kb on - strand, within EX28DRAFT_0609at 607.921 kb on + strand, within EX28DRAFT_0609at 607.922 kb on - strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.923 kb on + strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.924 kb on - strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 607.994 kb on + strand, within EX28DRAFT_0609at 608.179 kb on + strand, within EX28DRAFT_0609at 608.180 kb on - strand, within EX28DRAFT_0609at 608.219 kb on - strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.276 kb on + strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.277 kb on - strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.312 kb on + strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.313 kb on - strand, within EX28DRAFT_0609at 608.315 kb on - strand, within EX28DRAFT_0609at 608.317 kb on - strandat 608.404 kb on + strandat 608.405 kb on - strandat 608.441 kb on + strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.442 kb on - strandat 608.443 kb on + strandat 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.468 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.608 kb on + strand, within EX28DRAFT_0610at 608.655 kb on - strand, within EX28DRAFT_0610at 608.665 kb on + strand, within EX28DRAFT_0610at 608.666 kb on - strand, within EX28DRAFT_0610at 608.666 kb on - strand, within EX28DRAFT_0610at 608.705 kb on + strand, within EX28DRAFT_0610at 608.783 kb on + strand, within EX28DRAFT_0610at 608.784 kb on - strand, within EX28DRAFT_0610at 608.784 kb on - strand, within EX28DRAFT_0610at 608.795 kb on + strand, within EX28DRAFT_0610at 608.795 kb on + strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.796 kb on - strand, within EX28DRAFT_0610at 608.797 kb on + strand, within EX28DRAFT_0610at 608.797 kb on + strand, within EX28DRAFT_0610at 608.798 kb on - strand, within EX28DRAFT_0610at 608.922 kb on + strandat 608.922 kb on + strandat 608.922 kb on + strandat 608.922 kb on + strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.923 kb on - strandat 608.925 kb on + strandat 608.926 kb on - strandat 609.014 kb on - strandat 609.372 kb on + strand, within EX28DRAFT_0611at 609.493 kb on - strand, within EX28DRAFT_0611at 609.507 kb on + strand, within EX28DRAFT_0611at 609.507 kb on + strand, within EX28DRAFT_0611at 609.508 kb on - strand, within EX28DRAFT_0611at 609.508 kb on - strand, within EX28DRAFT_0611at 609.579 kb on + strand, within EX28DRAFT_0611at 609.640 kb on - strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.654 kb on + strand, within EX28DRAFT_0611at 609.774 kb on + strand, within EX28DRAFT_0611at 609.849 kb on + strand, within EX28DRAFT_0611

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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607,541 - EX28DRAFT_0609 0.13 -2.9
607,583 + EX28DRAFT_0609 0.17 -0.7
607,846 + EX28DRAFT_0609 0.43 -0.4
607,853 - EX28DRAFT_0609 0.44 -2.8
607,921 + EX28DRAFT_0609 0.51 -0.8
607,922 - EX28DRAFT_0609 0.51 +0.6
607,923 + EX28DRAFT_0609 0.51 -0.3
607,923 + EX28DRAFT_0609 0.51 +0.6
607,924 - EX28DRAFT_0609 0.51 -0.3
607,924 - EX28DRAFT_0609 0.51 +0.9
607,924 - EX28DRAFT_0609 0.51 +0.2
607,924 - EX28DRAFT_0609 0.51 +0.3
607,924 - EX28DRAFT_0609 0.51 -1.5
607,924 - EX28DRAFT_0609 0.51 -2.0
607,924 - EX28DRAFT_0609 0.51 +2.7
607,924 - EX28DRAFT_0609 0.51 -0.6
607,994 + EX28DRAFT_0609 0.58 -0.3
607,994 + EX28DRAFT_0609 0.58 -0.1
607,994 + EX28DRAFT_0609 0.58 +0.3
607,994 + EX28DRAFT_0609 0.58 -0.8
608,179 + EX28DRAFT_0609 0.76 -1.1
608,180 - EX28DRAFT_0609 0.76 +0.1
608,219 - EX28DRAFT_0609 0.80 +0.6
608,276 + EX28DRAFT_0609 0.86 -0.8
608,276 + EX28DRAFT_0609 0.86 -0.6
608,277 - EX28DRAFT_0609 0.86 -0.1
608,277 - EX28DRAFT_0609 0.86 -0.7
608,312 + EX28DRAFT_0609 0.90 -1.3
608,312 + EX28DRAFT_0609 0.90 -0.1
608,312 + EX28DRAFT_0609 0.90 -1.4
608,312 + EX28DRAFT_0609 0.90 -1.4
608,312 + EX28DRAFT_0609 0.90 -2.6
608,313 - EX28DRAFT_0609 0.90 -1.2
608,313 - EX28DRAFT_0609 0.90 -1.3
608,315 - EX28DRAFT_0609 0.90 +0.1
608,317 - -0.5
608,404 + +0.9
608,405 - -0.0
608,441 + -0.3
608,442 - -1.0
608,442 - -0.5
608,442 - +0.7
608,442 - -0.3
608,443 + -0.7
608,468 + EX28DRAFT_0610 0.10 -2.2
608,468 + EX28DRAFT_0610 0.10 -0.6
608,468 + EX28DRAFT_0610 0.10 +0.0
608,468 + EX28DRAFT_0610 0.10 -1.7
608,468 + EX28DRAFT_0610 0.10 +0.1
608,608 + EX28DRAFT_0610 0.40 +0.2
608,608 + EX28DRAFT_0610 0.40 -1.0
608,608 + EX28DRAFT_0610 0.40 -0.3
608,655 - EX28DRAFT_0610 0.50 -0.4
608,665 + EX28DRAFT_0610 0.52 -2.6
608,666 - EX28DRAFT_0610 0.52 -0.2
608,666 - EX28DRAFT_0610 0.52 -0.6
608,705 + EX28DRAFT_0610 0.60 -1.2
608,783 + EX28DRAFT_0610 0.77 -1.2
608,784 - EX28DRAFT_0610 0.77 -1.1
608,784 - EX28DRAFT_0610 0.77 +2.1
608,795 + EX28DRAFT_0610 0.79 -0.4
608,795 + EX28DRAFT_0610 0.79 -0.4
608,796 - EX28DRAFT_0610 0.80 +0.4
608,796 - EX28DRAFT_0610 0.80 +1.4
608,796 - EX28DRAFT_0610 0.80 +1.4
608,797 + EX28DRAFT_0610 0.80 -0.3
608,797 + EX28DRAFT_0610 0.80 -0.6
608,798 - EX28DRAFT_0610 0.80 -0.6
608,922 + +2.0
608,922 + -2.8
608,922 + +3.5
608,922 + +2.3
608,923 - +0.8
608,923 - -0.6
608,923 - +0.1
608,923 - -0.2
608,925 + -0.1
608,926 - -0.6
609,014 - +1.7
609,372 + EX28DRAFT_0611 0.30 -0.3
609,493 - EX28DRAFT_0611 0.40 +1.5
609,507 + EX28DRAFT_0611 0.41 +0.7
609,507 + EX28DRAFT_0611 0.41 -0.0
609,508 - EX28DRAFT_0611 0.41 -0.1
609,508 - EX28DRAFT_0611 0.41 -0.2
609,579 + EX28DRAFT_0611 0.47 -0.7
609,640 - EX28DRAFT_0611 0.52 -0.4
609,654 + EX28DRAFT_0611 0.53 -0.8
609,654 + EX28DRAFT_0611 0.53 +0.7
609,654 + EX28DRAFT_0611 0.53 -1.2
609,774 + EX28DRAFT_0611 0.63 -0.6
609,849 + EX28DRAFT_0611 0.69 +0.1

Or see this region's nucleotide sequence