Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0516

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0515 and EX28DRAFT_0516 are separated by 53 nucleotidesEX28DRAFT_0516 and EX28DRAFT_0517 overlap by 1 nucleotides EX28DRAFT_0515: EX28DRAFT_0515 - dTDP-glucose 4,6-dehydratase (EC 4.2.1.46), at 508,489 to 509,571 _0515 EX28DRAFT_0516: EX28DRAFT_0516 - Nucleoside-diphosphate-sugar epimerases, at 509,625 to 510,569 _0516 EX28DRAFT_0517: EX28DRAFT_0517 - UDP-N-acetylmuramyl pentapeptide phosphotransferase/UDP-N-acetylglucosamine-1-phosphate transferase, at 510,569 to 511,603 _0517 Position (kb) 509 510 511Strain fitness (log2 ratio) -2 -1 0 1at 509.192 kb on - strand, within EX28DRAFT_0515at 509.533 kb on + strandat 509.586 kb on + strandat 509.599 kb on - strandat 509.704 kb on + strandat 509.762 kb on + strand, within EX28DRAFT_0516at 509.807 kb on + strand, within EX28DRAFT_0516at 509.838 kb on - strand, within EX28DRAFT_0516at 509.962 kb on + strand, within EX28DRAFT_0516at 509.963 kb on - strand, within EX28DRAFT_0516at 510.033 kb on + strand, within EX28DRAFT_0516at 510.038 kb on + strand, within EX28DRAFT_0516at 510.039 kb on - strand, within EX28DRAFT_0516at 510.039 kb on - strand, within EX28DRAFT_0516at 510.106 kb on + strand, within EX28DRAFT_0516at 510.381 kb on + strand, within EX28DRAFT_0516at 510.993 kb on - strand, within EX28DRAFT_0517at 511.034 kb on - strand, within EX28DRAFT_0517at 511.093 kb on - strand, within EX28DRAFT_0517at 511.093 kb on - strand, within EX28DRAFT_0517at 511.334 kb on - strand, within EX28DRAFT_0517at 511.337 kb on - strand, within EX28DRAFT_0517

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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509,192 - EX28DRAFT_0515 0.65 -1.8
509,533 + -0.4
509,586 + +0.8
509,599 - -1.7
509,704 + -0.6
509,762 + EX28DRAFT_0516 0.14 -0.1
509,807 + EX28DRAFT_0516 0.19 -1.0
509,838 - EX28DRAFT_0516 0.23 +1.6
509,962 + EX28DRAFT_0516 0.36 +1.2
509,963 - EX28DRAFT_0516 0.36 +0.2
510,033 + EX28DRAFT_0516 0.43 +0.2
510,038 + EX28DRAFT_0516 0.44 +1.0
510,039 - EX28DRAFT_0516 0.44 +1.1
510,039 - EX28DRAFT_0516 0.44 -1.1
510,106 + EX28DRAFT_0516 0.51 +1.7
510,381 + EX28DRAFT_0516 0.80 +1.1
510,993 - EX28DRAFT_0517 0.41 -1.4
511,034 - EX28DRAFT_0517 0.45 -0.9
511,093 - EX28DRAFT_0517 0.51 -1.2
511,093 - EX28DRAFT_0517 0.51 -0.6
511,334 - EX28DRAFT_0517 0.74 -1.7
511,337 - EX28DRAFT_0517 0.74 -0.8

Or see this region's nucleotide sequence