Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0408 and EX28DRAFT_0409 are separated by 15 nucleotides EX28DRAFT_0409 and EX28DRAFT_0410 are separated by 49 nucleotides
EX28DRAFT_0408: EX28DRAFT_0408 - ABC-type sugar transport system, ATPase component, at 385,455 to 386,975
_0408
EX28DRAFT_0409: EX28DRAFT_0409 - ABC-type glucose/galactose transport system, permease component, at 386,991 to 388,001
_0409
EX28DRAFT_0410: EX28DRAFT_0410 - Glutamine synthetase, at 388,051 to 389,439
_0410
Position (kb) 386
387
388
389 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 386.027 kb on + strand, within EX28DRAFT_0408 at 386.038 kb on + strand, within EX28DRAFT_0408 at 386.064 kb on + strand, within EX28DRAFT_0408 at 386.064 kb on + strand, within EX28DRAFT_0408 at 386.064 kb on + strand, within EX28DRAFT_0408 at 386.064 kb on + strand, within EX28DRAFT_0408 at 386.066 kb on + strand, within EX28DRAFT_0408 at 386.066 kb on + strand, within EX28DRAFT_0408 at 386.289 kb on - strand, within EX28DRAFT_0408 at 386.415 kb on - strand, within EX28DRAFT_0408 at 386.463 kb on - strand, within EX28DRAFT_0408 at 386.466 kb on - strand, within EX28DRAFT_0408 at 386.466 kb on - strand, within EX28DRAFT_0408 at 386.508 kb on - strand, within EX28DRAFT_0408 at 386.511 kb on + strand, within EX28DRAFT_0408 at 386.511 kb on + strand, within EX28DRAFT_0408 at 386.511 kb on + strand, within EX28DRAFT_0408 at 386.512 kb on - strand, within EX28DRAFT_0408 at 386.550 kb on - strand, within EX28DRAFT_0408 at 386.550 kb on - strand, within EX28DRAFT_0408 at 386.719 kb on + strand, within EX28DRAFT_0408 at 386.835 kb on - strand at 386.837 kb on + strand at 386.838 kb on - strand at 387.024 kb on + strand at 387.041 kb on + strand at 387.045 kb on + strand at 387.045 kb on + strand at 387.045 kb on + strand at 387.046 kb on - strand at 387.059 kb on - strand at 387.061 kb on + strand at 387.093 kb on - strand, within EX28DRAFT_0409 at 387.100 kb on + strand, within EX28DRAFT_0409 at 387.146 kb on + strand, within EX28DRAFT_0409 at 387.147 kb on - strand, within EX28DRAFT_0409 at 387.362 kb on + strand, within EX28DRAFT_0409 at 387.365 kb on + strand, within EX28DRAFT_0409 at 387.375 kb on + strand, within EX28DRAFT_0409 at 387.411 kb on - strand, within EX28DRAFT_0409 at 387.444 kb on + strand, within EX28DRAFT_0409 at 387.445 kb on - strand, within EX28DRAFT_0409 at 387.543 kb on + strand, within EX28DRAFT_0409 at 387.543 kb on + strand, within EX28DRAFT_0409 at 387.543 kb on + strand, within EX28DRAFT_0409 at 387.544 kb on - strand, within EX28DRAFT_0409 at 387.544 kb on - strand, within EX28DRAFT_0409 at 387.544 kb on - strand, within EX28DRAFT_0409 at 387.545 kb on + strand, within EX28DRAFT_0409 at 387.545 kb on + strand, within EX28DRAFT_0409 at 387.555 kb on + strand, within EX28DRAFT_0409 at 387.714 kb on + strand, within EX28DRAFT_0409 at 387.780 kb on + strand, within EX28DRAFT_0409 at 387.781 kb on - strand, within EX28DRAFT_0409 at 387.930 kb on + strand at 387.936 kb on - strand at 387.985 kb on - strand at 387.999 kb on + strand at 387.999 kb on + strand at 388.000 kb on - strand at 388.045 kb on + strand at 388.046 kb on - strand at 388.052 kb on + strand at 388.164 kb on - strand at 388.399 kb on - strand, within EX28DRAFT_0410 at 388.400 kb on + strand, within EX28DRAFT_0410 at 388.414 kb on - strand, within EX28DRAFT_0410 at 388.537 kb on - strand, within EX28DRAFT_0410 at 388.747 kb on + strand, within EX28DRAFT_0410 at 388.755 kb on - strand, within EX28DRAFT_0410 at 388.855 kb on - strand, within EX28DRAFT_0410 at 388.858 kb on - strand, within EX28DRAFT_0410 at 388.858 kb on - strand, within EX28DRAFT_0410 at 388.985 kb on - strand, within EX28DRAFT_0410
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 386,027 + EX28DRAFT_0408 0.38 +0.8 386,038 + EX28DRAFT_0408 0.38 +0.1 386,064 + EX28DRAFT_0408 0.40 -0.9 386,064 + EX28DRAFT_0408 0.40 +1.5 386,064 + EX28DRAFT_0408 0.40 +0.2 386,064 + EX28DRAFT_0408 0.40 -0.6 386,066 + EX28DRAFT_0408 0.40 -1.4 386,066 + EX28DRAFT_0408 0.40 -1.8 386,289 - EX28DRAFT_0408 0.55 +4.2 386,415 - EX28DRAFT_0408 0.63 -0.5 386,463 - EX28DRAFT_0408 0.66 +0.1 386,466 - EX28DRAFT_0408 0.66 -0.1 386,466 - EX28DRAFT_0408 0.66 +0.1 386,508 - EX28DRAFT_0408 0.69 -0.4 386,511 + EX28DRAFT_0408 0.69 +0.8 386,511 + EX28DRAFT_0408 0.69 -0.5 386,511 + EX28DRAFT_0408 0.69 -1.2 386,512 - EX28DRAFT_0408 0.69 -1.1 386,550 - EX28DRAFT_0408 0.72 -1.0 386,550 - EX28DRAFT_0408 0.72 +0.4 386,719 + EX28DRAFT_0408 0.83 -0.9 386,835 - +0.3 386,837 + -0.0 386,838 - +1.6 387,024 + +1.0 387,041 + +1.5 387,045 + -0.1 387,045 + +0.7 387,045 + +0.4 387,046 - -1.2 387,059 - +1.0 387,061 + +0.9 387,093 - EX28DRAFT_0409 0.10 -1.3 387,100 + EX28DRAFT_0409 0.11 +0.5 387,146 + EX28DRAFT_0409 0.15 +0.5 387,147 - EX28DRAFT_0409 0.15 -0.2 387,362 + EX28DRAFT_0409 0.37 -0.4 387,365 + EX28DRAFT_0409 0.37 +1.0 387,375 + EX28DRAFT_0409 0.38 -0.9 387,411 - EX28DRAFT_0409 0.42 -0.8 387,444 + EX28DRAFT_0409 0.45 -0.0 387,445 - EX28DRAFT_0409 0.45 +0.6 387,543 + EX28DRAFT_0409 0.55 -0.5 387,543 + EX28DRAFT_0409 0.55 +0.6 387,543 + EX28DRAFT_0409 0.55 +0.0 387,544 - EX28DRAFT_0409 0.55 +0.1 387,544 - EX28DRAFT_0409 0.55 -1.5 387,544 - EX28DRAFT_0409 0.55 +0.0 387,545 + EX28DRAFT_0409 0.55 +0.5 387,545 + EX28DRAFT_0409 0.55 -0.5 387,555 + EX28DRAFT_0409 0.56 -0.7 387,714 + EX28DRAFT_0409 0.72 +2.6 387,780 + EX28DRAFT_0409 0.78 -0.1 387,781 - EX28DRAFT_0409 0.78 -0.2 387,930 + -1.8 387,936 - +0.2 387,985 - +0.1 387,999 + -2.0 387,999 + +0.3 388,000 - +0.4 388,045 + +0.1 388,046 - +1.0 388,052 + -0.7 388,164 - +0.3 388,399 - EX28DRAFT_0410 0.25 -0.5 388,400 + EX28DRAFT_0410 0.25 +1.0 388,414 - EX28DRAFT_0410 0.26 +0.0 388,537 - EX28DRAFT_0410 0.35 +1.5 388,747 + EX28DRAFT_0410 0.50 -0.9 388,755 - EX28DRAFT_0410 0.51 -0.3 388,855 - EX28DRAFT_0410 0.58 -0.2 388,858 - EX28DRAFT_0410 0.58 -0.4 388,858 - EX28DRAFT_0410 0.58 +0.2 388,985 - EX28DRAFT_0410 0.67 +0.5
Or see this region's nucleotide sequence