Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0403 and EX28DRAFT_0404 are separated by 102 nucleotides EX28DRAFT_0404 and EX28DRAFT_0405 are separated by 19 nucleotides
EX28DRAFT_0403: EX28DRAFT_0403 - Protein of unknown function (DUF1228), at 379,807 to 380,955
_0403
EX28DRAFT_0404: EX28DRAFT_0404 - GTP cyclohydrolase I, at 381,058 to 381,726
_0404
EX28DRAFT_0405: EX28DRAFT_0405 - Predicted membrane protein, at 381,746 to 382,903
_0405
Position (kb) 381
382 Strain fitness (log2 ratio) -1
0
1
2 at 380.251 kb on + strand, within EX28DRAFT_0403 at 380.252 kb on - strand, within EX28DRAFT_0403 at 380.254 kb on - strand, within EX28DRAFT_0403 at 380.319 kb on - strand, within EX28DRAFT_0403 at 380.319 kb on - strand, within EX28DRAFT_0403 at 380.408 kb on + strand, within EX28DRAFT_0403 at 380.428 kb on + strand, within EX28DRAFT_0403 at 380.450 kb on - strand, within EX28DRAFT_0403 at 380.711 kb on + strand, within EX28DRAFT_0403 at 380.711 kb on + strand, within EX28DRAFT_0403 at 380.711 kb on + strand, within EX28DRAFT_0403 at 380.736 kb on - strand, within EX28DRAFT_0403 at 380.736 kb on - strand, within EX28DRAFT_0403 at 380.737 kb on + strand, within EX28DRAFT_0403 at 380.738 kb on - strand, within EX28DRAFT_0403 at 380.770 kb on + strand, within EX28DRAFT_0403 at 380.770 kb on + strand, within EX28DRAFT_0403 at 380.770 kb on + strand, within EX28DRAFT_0403 at 380.771 kb on - strand, within EX28DRAFT_0403 at 380.771 kb on - strand, within EX28DRAFT_0403 at 380.773 kb on - strand, within EX28DRAFT_0403 at 380.954 kb on - strand at 380.954 kb on - strand at 380.957 kb on + strand at 380.958 kb on - strand at 381.808 kb on + strand at 381.809 kb on - strand at 381.811 kb on + strand at 381.812 kb on - strand at 381.922 kb on + strand, within EX28DRAFT_0405 at 382.063 kb on + strand, within EX28DRAFT_0405 at 382.128 kb on + strand, within EX28DRAFT_0405 at 382.128 kb on + strand, within EX28DRAFT_0405 at 382.141 kb on + strand, within EX28DRAFT_0405 at 382.160 kb on + strand, within EX28DRAFT_0405 at 382.161 kb on - strand, within EX28DRAFT_0405 at 382.161 kb on - strand, within EX28DRAFT_0405 at 382.161 kb on - strand, within EX28DRAFT_0405 at 382.521 kb on - strand, within EX28DRAFT_0405 at 382.601 kb on + strand, within EX28DRAFT_0405 at 382.656 kb on + strand, within EX28DRAFT_0405 at 382.679 kb on + strand, within EX28DRAFT_0405
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 380,251 + EX28DRAFT_0403 0.39 +0.1 380,252 - EX28DRAFT_0403 0.39 +0.2 380,254 - EX28DRAFT_0403 0.39 -0.6 380,319 - EX28DRAFT_0403 0.45 -1.5 380,319 - EX28DRAFT_0403 0.45 -1.2 380,408 + EX28DRAFT_0403 0.52 -0.7 380,428 + EX28DRAFT_0403 0.54 -1.2 380,450 - EX28DRAFT_0403 0.56 +0.5 380,711 + EX28DRAFT_0403 0.79 +0.4 380,711 + EX28DRAFT_0403 0.79 +0.1 380,711 + EX28DRAFT_0403 0.79 -1.0 380,736 - EX28DRAFT_0403 0.81 +0.4 380,736 - EX28DRAFT_0403 0.81 +0.2 380,737 + EX28DRAFT_0403 0.81 +1.5 380,738 - EX28DRAFT_0403 0.81 +1.3 380,770 + EX28DRAFT_0403 0.84 -0.0 380,770 + EX28DRAFT_0403 0.84 -1.6 380,770 + EX28DRAFT_0403 0.84 +0.6 380,771 - EX28DRAFT_0403 0.84 +0.8 380,771 - EX28DRAFT_0403 0.84 -1.1 380,773 - EX28DRAFT_0403 0.84 -0.4 380,954 - +1.0 380,954 - +0.2 380,957 + -0.2 380,958 - +0.1 381,808 + +0.7 381,809 - -0.4 381,811 + -1.7 381,812 - -0.3 381,922 + EX28DRAFT_0405 0.15 -0.3 382,063 + EX28DRAFT_0405 0.27 -0.8 382,128 + EX28DRAFT_0405 0.33 +2.3 382,128 + EX28DRAFT_0405 0.33 +2.6 382,141 + EX28DRAFT_0405 0.34 -0.5 382,160 + EX28DRAFT_0405 0.36 +0.7 382,161 - EX28DRAFT_0405 0.36 -1.0 382,161 - EX28DRAFT_0405 0.36 -0.0 382,161 - EX28DRAFT_0405 0.36 -0.8 382,521 - EX28DRAFT_0405 0.67 +0.7 382,601 + EX28DRAFT_0405 0.74 -1.4 382,656 + EX28DRAFT_0405 0.79 +1.7 382,679 + EX28DRAFT_0405 0.81 +0.7
Or see this region's nucleotide sequence