Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0365 and EX28DRAFT_0366 are separated by 148 nucleotides EX28DRAFT_0366 and EX28DRAFT_0367 overlap by 38 nucleotides
EX28DRAFT_0365: EX28DRAFT_0365 - cyclic peptide transporter, at 335,290 to 336,933
_0365
EX28DRAFT_0366: EX28DRAFT_0366 - Mg2+ transporter (mgtE), at 337,082 to 338,518
_0366
EX28DRAFT_0367: EX28DRAFT_0367 - Sulfate permease and related transporters (MFS superfamily), at 338,481 to 339,770
_0367
Position (kb) 337
338
339 Strain fitness (log2 ratio) -2
-1
0
1
2 at 336.177 kb on + strand, within EX28DRAFT_0365 at 336.177 kb on + strand, within EX28DRAFT_0365 at 336.178 kb on - strand, within EX28DRAFT_0365 at 336.178 kb on - strand, within EX28DRAFT_0365 at 336.210 kb on + strand, within EX28DRAFT_0365 at 336.378 kb on + strand, within EX28DRAFT_0365 at 336.406 kb on + strand, within EX28DRAFT_0365 at 336.407 kb on - strand, within EX28DRAFT_0365 at 336.824 kb on - strand at 336.824 kb on - strand at 336.830 kb on + strand at 336.830 kb on + strand at 336.830 kb on + strand at 336.831 kb on - strand at 336.831 kb on - strand at 336.971 kb on + strand at 336.971 kb on + strand at 336.972 kb on - strand at 336.972 kb on - strand at 336.972 kb on - strand at 337.026 kb on - strand at 337.026 kb on - strand at 337.026 kb on - strand at 337.029 kb on + strand at 337.029 kb on + strand at 337.029 kb on + strand at 337.029 kb on + strand at 337.029 kb on + strand at 337.030 kb on - strand at 337.030 kb on - strand at 337.030 kb on - strand at 337.030 kb on - strand at 337.030 kb on - strand at 337.030 kb on - strand at 337.030 kb on - strand at 337.033 kb on + strand at 337.050 kb on + strand at 337.075 kb on - strand at 337.075 kb on - strand at 337.090 kb on - strand at 337.175 kb on - strand at 337.245 kb on + strand, within EX28DRAFT_0366 at 337.246 kb on - strand, within EX28DRAFT_0366 at 337.266 kb on + strand, within EX28DRAFT_0366 at 337.930 kb on - strand, within EX28DRAFT_0366 at 337.930 kb on - strand, within EX28DRAFT_0366 at 337.932 kb on - strand, within EX28DRAFT_0366 at 338.171 kb on - strand, within EX28DRAFT_0366 at 338.172 kb on + strand, within EX28DRAFT_0366 at 338.172 kb on + strand, within EX28DRAFT_0366 at 338.239 kb on + strand, within EX28DRAFT_0366 at 338.393 kb on - strand at 338.483 kb on - strand at 338.611 kb on - strand, within EX28DRAFT_0367 at 338.712 kb on - strand, within EX28DRAFT_0367 at 338.714 kb on + strand, within EX28DRAFT_0367 at 338.714 kb on + strand, within EX28DRAFT_0367 at 338.715 kb on - strand, within EX28DRAFT_0367 at 338.933 kb on + strand, within EX28DRAFT_0367 at 339.029 kb on + strand, within EX28DRAFT_0367 at 339.030 kb on - strand, within EX28DRAFT_0367 at 339.196 kb on + strand, within EX28DRAFT_0367 at 339.341 kb on + strand, within EX28DRAFT_0367 at 339.341 kb on + strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.422 kb on - strand, within EX28DRAFT_0367 at 339.426 kb on + strand, within EX28DRAFT_0367
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 336,177 + EX28DRAFT_0365 0.54 -0.1 336,177 + EX28DRAFT_0365 0.54 +0.4 336,178 - EX28DRAFT_0365 0.54 -0.7 336,178 - EX28DRAFT_0365 0.54 -0.5 336,210 + EX28DRAFT_0365 0.56 +0.6 336,378 + EX28DRAFT_0365 0.66 +0.6 336,406 + EX28DRAFT_0365 0.68 -0.1 336,407 - EX28DRAFT_0365 0.68 +0.3 336,824 - +0.9 336,824 - -1.2 336,830 + +1.2 336,830 + +0.3 336,830 + -0.1 336,831 - +0.5 336,831 - -1.6 336,971 + -2.6 336,971 + -1.0 336,972 - +0.4 336,972 - -0.3 336,972 - -1.1 337,026 - +0.2 337,026 - +1.2 337,026 - -0.1 337,029 + +0.9 337,029 + -1.3 337,029 + -1.6 337,029 + -1.8 337,029 + -0.4 337,030 - -1.5 337,030 - +0.6 337,030 - -0.8 337,030 - +0.4 337,030 - -0.1 337,030 - -0.5 337,030 - +0.0 337,033 + -0.9 337,050 + -0.5 337,075 - +1.1 337,075 - -0.9 337,090 - -0.7 337,175 - -0.3 337,245 + EX28DRAFT_0366 0.11 +0.1 337,246 - EX28DRAFT_0366 0.11 -2.0 337,266 + EX28DRAFT_0366 0.13 -1.8 337,930 - EX28DRAFT_0366 0.59 +0.2 337,930 - EX28DRAFT_0366 0.59 +0.9 337,932 - EX28DRAFT_0366 0.59 -0.2 338,171 - EX28DRAFT_0366 0.76 +2.1 338,172 + EX28DRAFT_0366 0.76 +0.6 338,172 + EX28DRAFT_0366 0.76 -2.0 338,239 + EX28DRAFT_0366 0.81 +0.5 338,393 - -1.1 338,483 - -0.7 338,611 - EX28DRAFT_0367 0.10 +1.0 338,712 - EX28DRAFT_0367 0.18 -0.3 338,714 + EX28DRAFT_0367 0.18 -0.6 338,714 + EX28DRAFT_0367 0.18 +0.7 338,715 - EX28DRAFT_0367 0.18 -0.9 338,933 + EX28DRAFT_0367 0.35 -0.6 339,029 + EX28DRAFT_0367 0.42 -1.3 339,030 - EX28DRAFT_0367 0.43 -1.3 339,196 + EX28DRAFT_0367 0.55 -0.4 339,341 + EX28DRAFT_0367 0.67 +1.0 339,341 + EX28DRAFT_0367 0.67 -0.7 339,422 - EX28DRAFT_0367 0.73 +1.5 339,422 - EX28DRAFT_0367 0.73 -1.1 339,422 - EX28DRAFT_0367 0.73 +0.6 339,422 - EX28DRAFT_0367 0.73 +0.2 339,426 + EX28DRAFT_0367 0.73 -0.2
Or see this region's nucleotide sequence