Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0323 and EX28DRAFT_0324 are separated by 2 nucleotides EX28DRAFT_0324 and EX28DRAFT_0325 overlap by 4 nucleotides
EX28DRAFT_0323: EX28DRAFT_0323 - NADH (or F420H2) dehydrogenase, subunit C, at 283,838 to 285,640
_0323
EX28DRAFT_0324: EX28DRAFT_0324 - NADH-quinone oxidoreductase, E subunit, at 285,643 to 286,143
_0324
EX28DRAFT_0325: EX28DRAFT_0325 - NADH-quinone oxidoreductase, F subunit, at 286,140 to 287,477
_0325
Position (kb) 285
286
287 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1 at 284.802 kb on - strand, within EX28DRAFT_0323 at 285.018 kb on - strand, within EX28DRAFT_0323 at 285.228 kb on - strand, within EX28DRAFT_0323 at 285.228 kb on - strand, within EX28DRAFT_0323 at 285.464 kb on - strand at 285.467 kb on - strand at 285.605 kb on - strand at 285.619 kb on + strand at 285.809 kb on - strand, within EX28DRAFT_0324 at 285.868 kb on + strand, within EX28DRAFT_0324 at 286.047 kb on + strand, within EX28DRAFT_0324 at 286.047 kb on + strand, within EX28DRAFT_0324 at 286.671 kb on + strand, within EX28DRAFT_0325 at 286.672 kb on - strand, within EX28DRAFT_0325 at 286.700 kb on + strand, within EX28DRAFT_0325 at 287.084 kb on + strand, within EX28DRAFT_0325
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 284,802 - EX28DRAFT_0323 0.53 -2.4 285,018 - EX28DRAFT_0323 0.65 -4.4 285,228 - EX28DRAFT_0323 0.77 -3.5 285,228 - EX28DRAFT_0323 0.77 -5.0 285,464 - +1.7 285,467 - -3.5 285,605 - -4.8 285,619 + -4.9 285,809 - EX28DRAFT_0324 0.33 -3.3 285,868 + EX28DRAFT_0324 0.45 -4.4 286,047 + EX28DRAFT_0324 0.81 -1.7 286,047 + EX28DRAFT_0324 0.81 -2.8 286,671 + EX28DRAFT_0325 0.40 -6.1 286,672 - EX28DRAFT_0325 0.40 -3.5 286,700 + EX28DRAFT_0325 0.42 -3.6 287,084 + EX28DRAFT_0325 0.71 -4.3
Or see this region's nucleotide sequence