Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0148

Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0147 and EX28DRAFT_0148 are separated by 11 nucleotidesEX28DRAFT_0148 and EX28DRAFT_0149 are separated by 301 nucleotides EX28DRAFT_0147: EX28DRAFT_0147 - methylmalonic acid semialdehyde dehydrogenase, at 91,102 to 92,607 _0147 EX28DRAFT_0148: EX28DRAFT_0148 - Acetolactate synthase, at 92,619 to 94,544 _0148 EX28DRAFT_0149: EX28DRAFT_0149 - Predicted dehydrogenases and related proteins, at 94,846 to 95,832 _0149 Position (kb) 92 93 94 95Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 91.802 kb on - strand, within EX28DRAFT_0147at 91.977 kb on + strand, within EX28DRAFT_0147at 92.113 kb on + strand, within EX28DRAFT_0147at 92.195 kb on - strand, within EX28DRAFT_0147at 92.195 kb on - strand, within EX28DRAFT_0147at 92.245 kb on + strand, within EX28DRAFT_0147at 92.245 kb on + strand, within EX28DRAFT_0147at 92.246 kb on - strand, within EX28DRAFT_0147at 92.246 kb on - strand, within EX28DRAFT_0147at 92.332 kb on + strand, within EX28DRAFT_0147at 92.332 kb on + strand, within EX28DRAFT_0147at 92.332 kb on + strand, within EX28DRAFT_0147at 92.333 kb on - strand, within EX28DRAFT_0147at 92.618 kb on + strandat 92.633 kb on + strandat 92.634 kb on - strandat 92.676 kb on + strandat 92.677 kb on - strandat 92.828 kb on + strand, within EX28DRAFT_0148at 92.910 kb on - strand, within EX28DRAFT_0148at 92.976 kb on + strand, within EX28DRAFT_0148at 92.977 kb on - strand, within EX28DRAFT_0148at 93.022 kb on - strand, within EX28DRAFT_0148at 93.022 kb on - strand, within EX28DRAFT_0148at 93.137 kb on + strand, within EX28DRAFT_0148at 93.138 kb on - strand, within EX28DRAFT_0148at 93.430 kb on + strand, within EX28DRAFT_0148at 93.430 kb on + strand, within EX28DRAFT_0148at 93.447 kb on - strand, within EX28DRAFT_0148at 93.545 kb on + strand, within EX28DRAFT_0148at 93.546 kb on - strand, within EX28DRAFT_0148at 93.802 kb on + strand, within EX28DRAFT_0148at 93.949 kb on + strand, within EX28DRAFT_0148at 93.984 kb on + strand, within EX28DRAFT_0148at 93.997 kb on - strand, within EX28DRAFT_0148at 94.071 kb on + strand, within EX28DRAFT_0148at 94.072 kb on - strand, within EX28DRAFT_0148at 94.095 kb on + strand, within EX28DRAFT_0148at 94.096 kb on - strand, within EX28DRAFT_0148at 94.096 kb on - strand, within EX28DRAFT_0148at 94.096 kb on - strand, within EX28DRAFT_0148at 94.142 kb on + strand, within EX28DRAFT_0148at 94.142 kb on + strand, within EX28DRAFT_0148at 94.143 kb on - strand, within EX28DRAFT_0148at 94.187 kb on + strand, within EX28DRAFT_0148at 94.188 kb on - strand, within EX28DRAFT_0148at 94.311 kb on + strand, within EX28DRAFT_0148at 94.437 kb on + strandat 94.619 kb on - strandat 94.890 kb on - strandat 94.890 kb on - strandat 94.899 kb on + strandat 94.981 kb on + strand, within EX28DRAFT_0149at 94.982 kb on - strand, within EX28DRAFT_0149at 94.982 kb on - strand, within EX28DRAFT_0149at 95.126 kb on + strand, within EX28DRAFT_0149at 95.166 kb on - strand, within EX28DRAFT_0149at 95.177 kb on - strand, within EX28DRAFT_0149at 95.491 kb on + strand, within EX28DRAFT_0149at 95.491 kb on + strand, within EX28DRAFT_0149

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
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91,802 - EX28DRAFT_0147 0.46 -0.6
91,977 + EX28DRAFT_0147 0.58 +0.8
92,113 + EX28DRAFT_0147 0.67 -1.5
92,195 - EX28DRAFT_0147 0.73 -0.5
92,195 - EX28DRAFT_0147 0.73 -1.9
92,245 + EX28DRAFT_0147 0.76 +1.8
92,245 + EX28DRAFT_0147 0.76 +1.8
92,246 - EX28DRAFT_0147 0.76 -0.9
92,246 - EX28DRAFT_0147 0.76 +0.0
92,332 + EX28DRAFT_0147 0.82 -0.2
92,332 + EX28DRAFT_0147 0.82 -0.8
92,332 + EX28DRAFT_0147 0.82 -0.4
92,333 - EX28DRAFT_0147 0.82 +0.1
92,618 + -0.1
92,633 + +0.8
92,634 - -2.4
92,676 + -2.0
92,677 - -1.2
92,828 + EX28DRAFT_0148 0.11 +1.1
92,910 - EX28DRAFT_0148 0.15 +0.0
92,976 + EX28DRAFT_0148 0.19 -2.1
92,977 - EX28DRAFT_0148 0.19 -0.5
93,022 - EX28DRAFT_0148 0.21 -1.2
93,022 - EX28DRAFT_0148 0.21 -1.1
93,137 + EX28DRAFT_0148 0.27 -0.8
93,138 - EX28DRAFT_0148 0.27 -0.7
93,430 + EX28DRAFT_0148 0.42 -0.8
93,430 + EX28DRAFT_0148 0.42 -0.7
93,447 - EX28DRAFT_0148 0.43 -0.3
93,545 + EX28DRAFT_0148 0.48 +0.2
93,546 - EX28DRAFT_0148 0.48 -0.5
93,802 + EX28DRAFT_0148 0.61 -0.3
93,949 + EX28DRAFT_0148 0.69 -0.9
93,984 + EX28DRAFT_0148 0.71 -1.6
93,997 - EX28DRAFT_0148 0.72 +0.7
94,071 + EX28DRAFT_0148 0.75 -0.9
94,072 - EX28DRAFT_0148 0.75 -2.1
94,095 + EX28DRAFT_0148 0.77 -0.5
94,096 - EX28DRAFT_0148 0.77 +0.8
94,096 - EX28DRAFT_0148 0.77 -4.5
94,096 - EX28DRAFT_0148 0.77 -1.0
94,142 + EX28DRAFT_0148 0.79 +0.3
94,142 + EX28DRAFT_0148 0.79 -0.6
94,143 - EX28DRAFT_0148 0.79 +0.5
94,187 + EX28DRAFT_0148 0.81 -1.3
94,188 - EX28DRAFT_0148 0.81 -0.6
94,311 + EX28DRAFT_0148 0.88 +0.7
94,437 + -1.8
94,619 - +1.3
94,890 - -0.9
94,890 - -0.2
94,899 + -0.9
94,981 + EX28DRAFT_0149 0.14 -0.4
94,982 - EX28DRAFT_0149 0.14 -0.9
94,982 - EX28DRAFT_0149 0.14 +0.2
95,126 + EX28DRAFT_0149 0.28 -1.3
95,166 - EX28DRAFT_0149 0.32 -1.5
95,177 - EX28DRAFT_0149 0.34 -1.2
95,491 + EX28DRAFT_0149 0.65 -0.9
95,491 + EX28DRAFT_0149 0.65 -1.2

Or see this region's nucleotide sequence