Experiment: Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0003 and EX28DRAFT_0004 overlap by 17 nucleotides EX28DRAFT_0004 and EX28DRAFT_0005 are separated by 341 nucleotides EX28DRAFT_0005 and EX28DRAFT_0006 are separated by 32 nucleotides EX28DRAFT_0006 and EX28DRAFT_0007 are separated by 10 nucleotides
EX28DRAFT_0003: EX28DRAFT_0003 - bacterioferritin, at 951 to 1,427
_0003
EX28DRAFT_0004: EX28DRAFT_0004 - Type IV leader peptidase family, at 1,411 to 1,923
_0004
EX28DRAFT_0005: EX28DRAFT_0005 - SSU ribosomal protein S10P, at 2,265 to 2,576
_0005
EX28DRAFT_0006: EX28DRAFT_0006 - 50S ribosomal protein L3, bacterial, at 2,609 to 3,238
_0006
EX28DRAFT_0007: EX28DRAFT_0007 - LSU ribosomal protein L4P, at 3,249 to 3,854
_0007
Position (kb) 2
3 Strain fitness (log2 ratio) -1
0
1
2 at 1.282 kb on + strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.283 kb on - strand, within EX28DRAFT_0003 at 1.290 kb on + strand, within EX28DRAFT_0003 at 1.291 kb on - strand, within EX28DRAFT_0003 at 1.291 kb on - strand, within EX28DRAFT_0003 at 1.395 kb on + strand at 1.444 kb on + strand at 1.539 kb on + strand, within EX28DRAFT_0004 at 1.540 kb on - strand, within EX28DRAFT_0004 at 1.625 kb on - strand, within EX28DRAFT_0004 at 1.677 kb on - strand, within EX28DRAFT_0004 at 1.677 kb on - strand, within EX28DRAFT_0004 at 1.698 kb on - strand, within EX28DRAFT_0004 at 1.818 kb on + strand, within EX28DRAFT_0004 at 1.994 kb on + strand at 1.995 kb on - strand at 1.995 kb on - strand at 2.027 kb on + strand at 2.028 kb on - strand at 2.028 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=poplar; PlantTreatment=None; Sample=rhizosphere; GrowthSubstrate=quartz_sand; Collection=outgrowth_in_MGL; Time=7_days remove 1,282 + EX28DRAFT_0003 0.69 +1.7 1,283 - EX28DRAFT_0003 0.70 +0.4 1,283 - EX28DRAFT_0003 0.70 -1.3 1,283 - EX28DRAFT_0003 0.70 -0.6 1,290 + EX28DRAFT_0003 0.71 -0.8 1,291 - EX28DRAFT_0003 0.71 +1.3 1,291 - EX28DRAFT_0003 0.71 -0.3 1,395 + +0.6 1,444 + +0.7 1,539 + EX28DRAFT_0004 0.25 +0.2 1,540 - EX28DRAFT_0004 0.25 -0.0 1,625 - EX28DRAFT_0004 0.42 -0.3 1,677 - EX28DRAFT_0004 0.52 +0.4 1,677 - EX28DRAFT_0004 0.52 +1.0 1,698 - EX28DRAFT_0004 0.56 -0.5 1,818 + EX28DRAFT_0004 0.79 +0.8 1,994 + -0.8 1,995 - +1.5 1,995 - -1.7 2,027 + +0.2 2,028 - +1.2 2,028 - +2.0
Or see this region's nucleotide sequence