Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS24185 and ABIE41_RS24190 are separated by 158 nucleotides ABIE41_RS24190 and ABIE41_RS24195 are separated by 54 nucleotides ABIE41_RS24195 and ABIE41_RS24200 are separated by 106 nucleotides
ABIE41_RS24185: ABIE41_RS24185 - helix-turn-helix transcriptional regulator, at 4,995,952 to 4,996,563
_RS24185
ABIE41_RS24190: ABIE41_RS24190 - GntR family transcriptional regulator, at 4,996,722 to 4,997,504
_RS24190
ABIE41_RS24195: ABIE41_RS24195 - PfkB family carbohydrate kinase, at 4,997,559 to 4,998,506
_RS24195
ABIE41_RS24200: ABIE41_RS24200 - LuxR family transcriptional regulator, at 4,998,613 to 4,999,755
_RS24200
Position (kb)
4997
4998
4999 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4996.656 kb on + strand at 4996.745 kb on - strand at 4996.745 kb on - strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.750 kb on + strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.751 kb on - strand at 4996.780 kb on + strand at 4996.780 kb on + strand at 4996.780 kb on + strand at 4996.781 kb on - strand at 4996.781 kb on - strand at 4996.781 kb on - strand at 4996.781 kb on - strand at 4996.781 kb on - strand at 4996.945 kb on + strand, within ABIE41_RS24190 at 4996.946 kb on - strand, within ABIE41_RS24190 at 4996.999 kb on + strand, within ABIE41_RS24190 at 4997.000 kb on - strand, within ABIE41_RS24190 at 4997.000 kb on - strand, within ABIE41_RS24190 at 4997.000 kb on - strand, within ABIE41_RS24190 at 4997.259 kb on + strand, within ABIE41_RS24190 at 4997.284 kb on + strand, within ABIE41_RS24190 at 4997.295 kb on + strand, within ABIE41_RS24190 at 4997.413 kb on + strand, within ABIE41_RS24190 at 4997.413 kb on + strand, within ABIE41_RS24190 at 4997.413 kb on + strand, within ABIE41_RS24190 at 4997.414 kb on - strand, within ABIE41_RS24190 at 4997.414 kb on - strand, within ABIE41_RS24190 at 4998.514 kb on + strand at 4998.562 kb on + strand at 4998.562 kb on + strand at 4998.563 kb on - strand at 4998.766 kb on - strand, within ABIE41_RS24200 at 4998.820 kb on + strand, within ABIE41_RS24200 at 4998.889 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.970 kb on + strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4998.971 kb on - strand, within ABIE41_RS24200 at 4999.226 kb on - strand, within ABIE41_RS24200 at 4999.226 kb on - strand, within ABIE41_RS24200
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 4,996,656 + +0.3 4,996,745 - +0.5 4,996,745 - +0.1 4,996,750 + +0.8 4,996,750 + -1.2 4,996,750 + -2.0 4,996,750 + +0.9 4,996,750 + +0.2 4,996,750 + -0.1 4,996,750 + +1.6 4,996,750 + -0.5 4,996,751 - +0.0 4,996,751 - -1.4 4,996,751 - -0.1 4,996,751 - -2.7 4,996,751 - -0.4 4,996,751 - +0.5 4,996,751 - -1.9 4,996,751 - +0.9 4,996,780 + +1.2 4,996,780 + +0.0 4,996,780 + -2.1 4,996,781 - +0.3 4,996,781 - -0.4 4,996,781 - +0.8 4,996,781 - -0.9 4,996,781 - -2.6 4,996,945 + ABIE41_RS24190 0.28 +0.0 4,996,946 - ABIE41_RS24190 0.29 +0.8 4,996,999 + ABIE41_RS24190 0.35 -0.1 4,997,000 - ABIE41_RS24190 0.36 +2.1 4,997,000 - ABIE41_RS24190 0.36 -0.1 4,997,000 - ABIE41_RS24190 0.36 -0.3 4,997,259 + ABIE41_RS24190 0.69 +0.9 4,997,284 + ABIE41_RS24190 0.72 +0.6 4,997,295 + ABIE41_RS24190 0.73 -0.1 4,997,413 + ABIE41_RS24190 0.88 -0.7 4,997,413 + ABIE41_RS24190 0.88 -0.1 4,997,413 + ABIE41_RS24190 0.88 +1.3 4,997,414 - ABIE41_RS24190 0.88 +0.2 4,997,414 - ABIE41_RS24190 0.88 +2.6 4,998,514 + +0.0 4,998,562 + +0.0 4,998,562 + -0.0 4,998,563 - +0.3 4,998,766 - ABIE41_RS24200 0.13 -0.1 4,998,820 + ABIE41_RS24200 0.18 -0.2 4,998,889 + ABIE41_RS24200 0.24 +0.1 4,998,970 + ABIE41_RS24200 0.31 -0.2 4,998,970 + ABIE41_RS24200 0.31 -0.8 4,998,970 + ABIE41_RS24200 0.31 +1.4 4,998,970 + ABIE41_RS24200 0.31 +0.3 4,998,970 + ABIE41_RS24200 0.31 +0.2 4,998,970 + ABIE41_RS24200 0.31 +0.5 4,998,970 + ABIE41_RS24200 0.31 +0.1 4,998,970 + ABIE41_RS24200 0.31 +0.0 4,998,970 + ABIE41_RS24200 0.31 +0.5 4,998,970 + ABIE41_RS24200 0.31 +0.0 4,998,971 - ABIE41_RS24200 0.31 +0.1 4,998,971 - ABIE41_RS24200 0.31 -0.7 4,998,971 - ABIE41_RS24200 0.31 +0.7 4,998,971 - ABIE41_RS24200 0.31 -0.4 4,998,971 - ABIE41_RS24200 0.31 +2.6 4,998,971 - ABIE41_RS24200 0.31 +2.6 4,998,971 - ABIE41_RS24200 0.31 -0.4 4,998,971 - ABIE41_RS24200 0.31 +0.1 4,998,971 - ABIE41_RS24200 0.31 +0.4 4,998,971 - ABIE41_RS24200 0.31 +0.3 4,998,971 - ABIE41_RS24200 0.31 +0.6 4,999,226 - ABIE41_RS24200 0.54 -0.2 4,999,226 - ABIE41_RS24200 0.54 +1.6
Or see this region's nucleotide sequence