Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE41_RS07800 and ABIE41_RS07805 are separated by 158 nucleotides ABIE41_RS07805 and ABIE41_RS07810 are separated by 108 nucleotides
ABIE41_RS07800: ABIE41_RS07800 - lysine--tRNA ligase, at 1,601,734 to 1,603,443
_RS07800
ABIE41_RS07805: ABIE41_RS07805 - amidohydrolase, at 1,603,602 to 1,604,765
_RS07805
ABIE41_RS07810: ABIE41_RS07810 - transporter substrate-binding domain-containing protein, at 1,604,874 to 1,605,704
_RS07810
Position (kb)
1603
1604
1605 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1603.562 kb on + strand at 1603.563 kb on - strand at 1603.564 kb on + strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.565 kb on - strand at 1603.854 kb on + strand, within ABIE41_RS07805 at 1603.854 kb on + strand, within ABIE41_RS07805 at 1603.854 kb on + strand, within ABIE41_RS07805 at 1603.854 kb on + strand, within ABIE41_RS07805 at 1603.854 kb on + strand, within ABIE41_RS07805 at 1604.259 kb on - strand, within ABIE41_RS07805 at 1604.260 kb on + strand, within ABIE41_RS07805 at 1604.610 kb on + strand, within ABIE41_RS07805 at 1604.610 kb on + strand, within ABIE41_RS07805 at 1604.611 kb on - strand, within ABIE41_RS07805 at 1604.611 kb on - strand, within ABIE41_RS07805 at 1604.611 kb on - strand, within ABIE41_RS07805 at 1604.906 kb on - strand at 1604.917 kb on + strand at 1604.918 kb on - strand at 1604.918 kb on - strand at 1604.918 kb on - strand at 1604.950 kb on + strand at 1605.016 kb on + strand, within ABIE41_RS07810 at 1605.016 kb on + strand, within ABIE41_RS07810 at 1605.094 kb on - strand, within ABIE41_RS07810 at 1605.202 kb on + strand, within ABIE41_RS07810 at 1605.203 kb on - strand, within ABIE41_RS07810 at 1605.319 kb on + strand, within ABIE41_RS07810 at 1605.319 kb on + strand, within ABIE41_RS07810 at 1605.320 kb on - strand, within ABIE41_RS07810 at 1605.320 kb on - strand, within ABIE41_RS07810 at 1605.320 kb on - strand, within ABIE41_RS07810 at 1605.419 kb on + strand, within ABIE41_RS07810 at 1605.538 kb on + strand, within ABIE41_RS07810
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 1,603,562 + -1.2 1,603,563 - -1.2 1,603,564 + +0.3 1,603,565 - +3.6 1,603,565 - -1.2 1,603,565 - +1.0 1,603,565 - +0.1 1,603,565 - -0.2 1,603,565 - -0.3 1,603,565 - +0.7 1,603,565 - -0.3 1,603,854 + ABIE41_RS07805 0.22 -2.8 1,603,854 + ABIE41_RS07805 0.22 +0.1 1,603,854 + ABIE41_RS07805 0.22 -1.7 1,603,854 + ABIE41_RS07805 0.22 -2.8 1,603,854 + ABIE41_RS07805 0.22 +0.3 1,604,259 - ABIE41_RS07805 0.56 +3.2 1,604,260 + ABIE41_RS07805 0.57 -0.4 1,604,610 + ABIE41_RS07805 0.87 -1.0 1,604,610 + ABIE41_RS07805 0.87 +1.0 1,604,611 - ABIE41_RS07805 0.87 +0.5 1,604,611 - ABIE41_RS07805 0.87 +0.0 1,604,611 - ABIE41_RS07805 0.87 +1.0 1,604,906 - +0.2 1,604,917 + +0.2 1,604,918 - +0.2 1,604,918 - -0.5 1,604,918 - +0.5 1,604,950 + -0.2 1,605,016 + ABIE41_RS07810 0.17 -0.1 1,605,016 + ABIE41_RS07810 0.17 +0.7 1,605,094 - ABIE41_RS07810 0.26 +0.9 1,605,202 + ABIE41_RS07810 0.39 -2.0 1,605,203 - ABIE41_RS07810 0.40 +1.1 1,605,319 + ABIE41_RS07810 0.54 -0.4 1,605,319 + ABIE41_RS07810 0.54 +0.0 1,605,320 - ABIE41_RS07810 0.54 +1.4 1,605,320 - ABIE41_RS07810 0.54 +2.0 1,605,320 - ABIE41_RS07810 0.54 +1.0 1,605,419 + ABIE41_RS07810 0.66 +0.2 1,605,538 + ABIE41_RS07810 0.80 +2.1
Or see this region's nucleotide sequence