Strain Fitness in Bosea sp. OAE506 around ABIE41_RS04135

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE41_RS04130 and ABIE41_RS04135 are separated by 69 nucleotidesABIE41_RS04135 and ABIE41_RS04140 are separated by 62 nucleotidesABIE41_RS04140 and ABIE41_RS04145 are separated by 241 nucleotides ABIE41_RS04130: ABIE41_RS04130 - diguanylate cyclase, at 853,085 to 854,290 _RS04130 ABIE41_RS04135: ABIE41_RS04135 - glutaminase, at 854,360 to 855,292 _RS04135 ABIE41_RS04140: ABIE41_RS04140 - hypothetical protein, at 855,355 to 855,798 _RS04140 ABIE41_RS04145: ABIE41_RS04145 - methyl-accepting chemotaxis protein, at 856,040 to 857,782 _RS04145 Position (kb) 854 855 856Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 853.394 kb on + strand, within ABIE41_RS04130at 853.394 kb on + strand, within ABIE41_RS04130at 853.394 kb on + strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.395 kb on - strand, within ABIE41_RS04130at 853.434 kb on - strand, within ABIE41_RS04130at 853.649 kb on + strand, within ABIE41_RS04130at 853.649 kb on + strand, within ABIE41_RS04130at 853.649 kb on + strand, within ABIE41_RS04130at 853.650 kb on - strand, within ABIE41_RS04130at 853.650 kb on - strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.655 kb on + strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.656 kb on - strand, within ABIE41_RS04130at 853.811 kb on + strand, within ABIE41_RS04130at 853.811 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.841 kb on + strand, within ABIE41_RS04130at 853.842 kb on - strand, within ABIE41_RS04130at 853.842 kb on - strand, within ABIE41_RS04130at 854.064 kb on - strand, within ABIE41_RS04130at 854.064 kb on - strand, within ABIE41_RS04130at 854.177 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.288 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.438 kb on + strandat 854.439 kb on - strandat 854.440 kb on + strandat 854.876 kb on + strand, within ABIE41_RS04135at 854.876 kb on + strand, within ABIE41_RS04135at 854.876 kb on + strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.877 kb on - strand, within ABIE41_RS04135at 854.930 kb on + strand, within ABIE41_RS04135at 854.930 kb on + strand, within ABIE41_RS04135at 854.930 kb on + strand, within ABIE41_RS04135at 854.931 kb on - strand, within ABIE41_RS04135at 854.931 kb on - strand, within ABIE41_RS04135at 854.988 kb on - strand, within ABIE41_RS04135at 855.526 kb on + strand, within ABIE41_RS04140at 855.526 kb on + strand, within ABIE41_RS04140at 855.526 kb on + strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.527 kb on - strand, within ABIE41_RS04140at 855.529 kb on - strand, within ABIE41_RS04140at 855.886 kb on + strandat 855.886 kb on + strandat 855.887 kb on - strandat 855.887 kb on - strandat 855.887 kb on - strandat 855.888 kb on + strandat 855.889 kb on - strandat 856.023 kb on - strandat 856.023 kb on - strandat 856.054 kb on + strandat 856.055 kb on - strandat 856.055 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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853,394 + ABIE41_RS04130 0.26 +0.3
853,394 + ABIE41_RS04130 0.26 +0.9
853,394 + ABIE41_RS04130 0.26 -0.1
853,395 - ABIE41_RS04130 0.26 -3.1
853,395 - ABIE41_RS04130 0.26 -0.7
853,395 - ABIE41_RS04130 0.26 +0.2
853,395 - ABIE41_RS04130 0.26 -0.8
853,434 - ABIE41_RS04130 0.29 +0.0
853,649 + ABIE41_RS04130 0.47 +0.8
853,649 + ABIE41_RS04130 0.47 -0.5
853,649 + ABIE41_RS04130 0.47 +0.1
853,650 - ABIE41_RS04130 0.47 -0.4
853,650 - ABIE41_RS04130 0.47 -0.0
853,655 + ABIE41_RS04130 0.47 +0.0
853,655 + ABIE41_RS04130 0.47 +2.4
853,655 + ABIE41_RS04130 0.47 -0.9
853,655 + ABIE41_RS04130 0.47 -0.4
853,655 + ABIE41_RS04130 0.47 -0.7
853,655 + ABIE41_RS04130 0.47 -0.0
853,655 + ABIE41_RS04130 0.47 -0.2
853,655 + ABIE41_RS04130 0.47 -2.0
853,655 + ABIE41_RS04130 0.47 -0.3
853,655 + ABIE41_RS04130 0.47 +0.0
853,655 + ABIE41_RS04130 0.47 +0.3
853,656 - ABIE41_RS04130 0.47 -0.3
853,656 - ABIE41_RS04130 0.47 -0.0
853,656 - ABIE41_RS04130 0.47 -0.3
853,656 - ABIE41_RS04130 0.47 -0.1
853,656 - ABIE41_RS04130 0.47 -1.5
853,656 - ABIE41_RS04130 0.47 +1.4
853,811 + ABIE41_RS04130 0.60 +0.1
853,811 + ABIE41_RS04130 0.60 +0.1
853,841 + ABIE41_RS04130 0.63 +1.7
853,841 + ABIE41_RS04130 0.63 +0.1
853,841 + ABIE41_RS04130 0.63 +0.5
853,841 + ABIE41_RS04130 0.63 -0.2
853,842 - ABIE41_RS04130 0.63 -0.6
853,842 - ABIE41_RS04130 0.63 -0.2
854,064 - ABIE41_RS04130 0.81 +0.5
854,064 - ABIE41_RS04130 0.81 -0.8
854,177 + +1.3
854,288 + -0.5
854,288 + +0.6
854,288 + -0.6
854,288 + +1.3
854,288 + -0.2
854,438 + -0.5
854,438 + -0.7
854,438 + -1.8
854,438 + -0.3
854,438 + +0.2
854,438 + +0.7
854,438 + -0.6
854,438 + -0.3
854,438 + -0.1
854,439 - +1.3
854,440 + +1.1
854,876 + ABIE41_RS04135 0.55 +0.2
854,876 + ABIE41_RS04135 0.55 +1.4
854,876 + ABIE41_RS04135 0.55 -0.5
854,877 - ABIE41_RS04135 0.55 +0.4
854,877 - ABIE41_RS04135 0.55 +0.1
854,877 - ABIE41_RS04135 0.55 -0.3
854,877 - ABIE41_RS04135 0.55 +0.1
854,877 - ABIE41_RS04135 0.55 +1.0
854,930 + ABIE41_RS04135 0.61 +1.1
854,930 + ABIE41_RS04135 0.61 -0.2
854,930 + ABIE41_RS04135 0.61 +0.0
854,931 - ABIE41_RS04135 0.61 +0.4
854,931 - ABIE41_RS04135 0.61 +0.4
854,988 - ABIE41_RS04135 0.67 +0.2
855,526 + ABIE41_RS04140 0.39 -0.7
855,526 + ABIE41_RS04140 0.39 +0.3
855,526 + ABIE41_RS04140 0.39 -0.4
855,527 - ABIE41_RS04140 0.39 +1.0
855,527 - ABIE41_RS04140 0.39 -0.3
855,527 - ABIE41_RS04140 0.39 -1.2
855,527 - ABIE41_RS04140 0.39 +2.2
855,527 - ABIE41_RS04140 0.39 -0.9
855,527 - ABIE41_RS04140 0.39 -0.0
855,529 - ABIE41_RS04140 0.39 +1.7
855,886 + -0.7
855,886 + +1.3
855,887 - -2.3
855,887 - -0.6
855,887 - +0.5
855,888 + +0.9
855,889 - -0.1
856,023 - -0.6
856,023 - -0.0
856,054 + +0.1
856,055 - +0.1
856,055 - -0.4

Or see this region's nucleotide sequence