Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23910 and ABIE40_RS23915 overlap by 1 nucleotides ABIE40_RS23915 and ABIE40_RS23920 are separated by 13 nucleotides ABIE40_RS23920 and ABIE40_RS23925 overlap by 4 nucleotides
ABIE40_RS23910: ABIE40_RS23910 - ABC transporter permease subunit, at 926,109 to 926,834
_RS23910
ABIE40_RS23915: ABIE40_RS23915 - ABC transporter permease subunit, at 926,834 to 927,538
_RS23915
ABIE40_RS23920: ABIE40_RS23920 - ATP-binding cassette domain-containing protein, at 927,552 to 928,328
_RS23920
ABIE40_RS23925: ABIE40_RS23925 - histidine ammonia-lyase, at 928,325 to 929,812
_RS23925
Position (kb) 927
928
929 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 926.706 kb on + strand, within ABIE40_RS23910 at 926.706 kb on + strand, within ABIE40_RS23910 at 926.706 kb on + strand, within ABIE40_RS23910 at 926.739 kb on + strand, within ABIE40_RS23910 at 926.739 kb on + strand, within ABIE40_RS23910 at 926.740 kb on - strand, within ABIE40_RS23910 at 926.839 kb on + strand at 926.999 kb on + strand, within ABIE40_RS23915 at 926.999 kb on + strand, within ABIE40_RS23915 at 927.000 kb on - strand, within ABIE40_RS23915 at 927.000 kb on - strand, within ABIE40_RS23915 at 927.000 kb on - strand, within ABIE40_RS23915 at 927.299 kb on + strand, within ABIE40_RS23915 at 927.299 kb on + strand, within ABIE40_RS23915 at 927.402 kb on - strand, within ABIE40_RS23915 at 927.441 kb on - strand, within ABIE40_RS23915 at 927.441 kb on - strand, within ABIE40_RS23915 at 927.441 kb on - strand, within ABIE40_RS23915 at 927.441 kb on - strand, within ABIE40_RS23915 at 927.536 kb on + strand at 927.536 kb on + strand at 927.537 kb on - strand at 927.537 kb on - strand at 927.818 kb on + strand, within ABIE40_RS23920 at 927.869 kb on + strand, within ABIE40_RS23920 at 927.967 kb on + strand, within ABIE40_RS23920 at 927.968 kb on - strand, within ABIE40_RS23920 at 927.968 kb on - strand, within ABIE40_RS23920 at 928.475 kb on + strand, within ABIE40_RS23925 at 928.475 kb on + strand, within ABIE40_RS23925 at 928.476 kb on - strand, within ABIE40_RS23925 at 928.742 kb on + strand, within ABIE40_RS23925 at 928.743 kb on - strand, within ABIE40_RS23925 at 928.790 kb on + strand, within ABIE40_RS23925 at 928.790 kb on + strand, within ABIE40_RS23925 at 928.791 kb on - strand, within ABIE40_RS23925 at 929.037 kb on + strand, within ABIE40_RS23925 at 929.048 kb on - strand, within ABIE40_RS23925
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 926,706 + ABIE40_RS23910 0.82 -1.0 926,706 + ABIE40_RS23910 0.82 -0.7 926,706 + ABIE40_RS23910 0.82 -0.6 926,739 + ABIE40_RS23910 0.87 -0.5 926,739 + ABIE40_RS23910 0.87 -2.6 926,740 - ABIE40_RS23910 0.87 -0.6 926,839 + -1.6 926,999 + ABIE40_RS23915 0.23 -0.5 926,999 + ABIE40_RS23915 0.23 -3.9 927,000 - ABIE40_RS23915 0.24 -2.1 927,000 - ABIE40_RS23915 0.24 -0.2 927,000 - ABIE40_RS23915 0.24 -1.9 927,299 + ABIE40_RS23915 0.66 +0.0 927,299 + ABIE40_RS23915 0.66 -1.9 927,402 - ABIE40_RS23915 0.81 -0.9 927,441 - ABIE40_RS23915 0.86 -1.8 927,441 - ABIE40_RS23915 0.86 -2.0 927,441 - ABIE40_RS23915 0.86 -1.6 927,441 - ABIE40_RS23915 0.86 -2.5 927,536 + -0.2 927,536 + -0.3 927,537 - -1.9 927,537 - -1.3 927,818 + ABIE40_RS23920 0.34 +0.8 927,869 + ABIE40_RS23920 0.41 -0.7 927,967 + ABIE40_RS23920 0.53 -2.2 927,968 - ABIE40_RS23920 0.54 -1.8 927,968 - ABIE40_RS23920 0.54 -1.5 928,475 + ABIE40_RS23925 0.10 +1.4 928,475 + ABIE40_RS23925 0.10 +1.2 928,476 - ABIE40_RS23925 0.10 +2.8 928,742 + ABIE40_RS23925 0.28 -0.3 928,743 - ABIE40_RS23925 0.28 +1.3 928,790 + ABIE40_RS23925 0.31 -0.2 928,790 + ABIE40_RS23925 0.31 +1.0 928,791 - ABIE40_RS23925 0.31 -0.1 929,037 + ABIE40_RS23925 0.48 -1.0 929,048 - ABIE40_RS23925 0.49 +0.2
Or see this region's nucleotide sequence