Experiment: D-Ribose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS23895 and ABIE40_RS23900 are separated by 15 nucleotides ABIE40_RS23900 and ABIE40_RS23905 are separated by 175 nucleotides ABIE40_RS23905 and ABIE40_RS23910 are separated by 95 nucleotides ABIE40_RS23910 and ABIE40_RS23915 overlap by 1 nucleotides
ABIE40_RS23895: ABIE40_RS23895 - helix-turn-helix transcriptional regulator, at 924,000 to 924,227
_RS23895
ABIE40_RS23900: ABIE40_RS23900 - histidine utilization repressor, at 924,243 to 924,998
_RS23900
ABIE40_RS23905: ABIE40_RS23905 - transporter substrate-binding domain-containing protein, at 925,174 to 926,013
_RS23905
ABIE40_RS23910: ABIE40_RS23910 - ABC transporter permease subunit, at 926,109 to 926,834
_RS23910
ABIE40_RS23915: ABIE40_RS23915 - ABC transporter permease subunit, at 926,834 to 927,538
_RS23915
Position (kb) 925
926
927 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 924.174 kb on - strand, within ABIE40_RS23895 at 924.174 kb on - strand, within ABIE40_RS23895 at 924.222 kb on - strand at 924.238 kb on + strand at 924.239 kb on - strand at 924.239 kb on - strand at 924.244 kb on + strand at 924.463 kb on - strand, within ABIE40_RS23900 at 924.463 kb on - strand, within ABIE40_RS23900 at 924.463 kb on - strand, within ABIE40_RS23900 at 924.466 kb on + strand, within ABIE40_RS23900 at 924.466 kb on + strand, within ABIE40_RS23900 at 924.466 kb on + strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.467 kb on - strand, within ABIE40_RS23900 at 924.505 kb on + strand, within ABIE40_RS23900 at 924.506 kb on - strand, within ABIE40_RS23900 at 924.532 kb on + strand, within ABIE40_RS23900 at 924.532 kb on + strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.533 kb on - strand, within ABIE40_RS23900 at 924.736 kb on - strand, within ABIE40_RS23900 at 924.873 kb on + strand, within ABIE40_RS23900 at 924.950 kb on + strand at 924.951 kb on - strand at 925.004 kb on - strand at 925.083 kb on - strand at 925.084 kb on + strand at 925.167 kb on + strand at 925.168 kb on - strand at 925.168 kb on - strand at 925.188 kb on + strand at 925.188 kb on + strand at 925.189 kb on - strand at 925.189 kb on - strand at 925.189 kb on - strand at 925.282 kb on + strand, within ABIE40_RS23905 at 925.282 kb on + strand, within ABIE40_RS23905 at 925.282 kb on + strand, within ABIE40_RS23905 at 925.283 kb on - strand, within ABIE40_RS23905 at 925.283 kb on - strand, within ABIE40_RS23905 at 925.283 kb on - strand, within ABIE40_RS23905 at 925.501 kb on + strand, within ABIE40_RS23905 at 925.502 kb on - strand, within ABIE40_RS23905 at 925.502 kb on - strand, within ABIE40_RS23905 at 925.672 kb on + strand, within ABIE40_RS23905 at 925.723 kb on + strand, within ABIE40_RS23905 at 925.723 kb on + strand, within ABIE40_RS23905 at 925.723 kb on + strand, within ABIE40_RS23905 at 925.723 kb on + strand, within ABIE40_RS23905 at 925.905 kb on + strand, within ABIE40_RS23905 at 925.906 kb on - strand, within ABIE40_RS23905 at 925.906 kb on - strand, within ABIE40_RS23905 at 925.906 kb on - strand, within ABIE40_RS23905 at 926.108 kb on + strand at 926.108 kb on + strand at 926.109 kb on - strand at 926.109 kb on - strand at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.289 kb on + strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.290 kb on - strand, within ABIE40_RS23910 at 926.291 kb on + strand, within ABIE40_RS23910 at 926.291 kb on + strand, within ABIE40_RS23910 at 926.291 kb on + strand, within ABIE40_RS23910 at 926.292 kb on - strand, within ABIE40_RS23910 at 926.292 kb on - strand, within ABIE40_RS23910 at 926.331 kb on + strand, within ABIE40_RS23910 at 926.331 kb on + strand, within ABIE40_RS23910 at 926.331 kb on + strand, within ABIE40_RS23910 at 926.331 kb on + strand, within ABIE40_RS23910 at 926.332 kb on - strand, within ABIE40_RS23910 at 926.340 kb on + strand, within ABIE40_RS23910 at 926.341 kb on - strand, within ABIE40_RS23910 at 926.388 kb on + strand, within ABIE40_RS23910 at 926.389 kb on - strand, within ABIE40_RS23910 at 926.389 kb on - strand, within ABIE40_RS23910 at 926.389 kb on - strand, within ABIE40_RS23910 at 926.389 kb on - strand, within ABIE40_RS23910 at 926.389 kb on - strand, within ABIE40_RS23910 at 926.441 kb on + strand, within ABIE40_RS23910 at 926.441 kb on + strand, within ABIE40_RS23910 at 926.457 kb on + strand, within ABIE40_RS23910 at 926.484 kb on + strand, within ABIE40_RS23910 at 926.485 kb on - strand, within ABIE40_RS23910 at 926.485 kb on - strand, within ABIE40_RS23910 at 926.706 kb on + strand, within ABIE40_RS23910 at 926.706 kb on + strand, within ABIE40_RS23910 at 926.706 kb on + strand, within ABIE40_RS23910 at 926.739 kb on + strand, within ABIE40_RS23910 at 926.739 kb on + strand, within ABIE40_RS23910 at 926.740 kb on - strand, within ABIE40_RS23910 at 926.839 kb on + strand at 926.999 kb on + strand, within ABIE40_RS23915 at 926.999 kb on + strand, within ABIE40_RS23915 at 927.000 kb on - strand, within ABIE40_RS23915 at 927.000 kb on - strand, within ABIE40_RS23915 at 927.000 kb on - strand, within ABIE40_RS23915
Per-strain Table
Position Strand Gene LocusTag Fraction D-Ribose (C) remove 924,174 - ABIE40_RS23895 0.76 -0.2 924,174 - ABIE40_RS23895 0.76 +0.1 924,222 - +1.3 924,238 + -1.3 924,239 - +1.8 924,239 - -2.1 924,244 + +1.8 924,463 - ABIE40_RS23900 0.29 -1.2 924,463 - ABIE40_RS23900 0.29 -1.1 924,463 - ABIE40_RS23900 0.29 -1.8 924,466 + ABIE40_RS23900 0.29 -2.2 924,466 + ABIE40_RS23900 0.29 -2.0 924,466 + ABIE40_RS23900 0.29 +0.1 924,467 - ABIE40_RS23900 0.30 -0.0 924,467 - ABIE40_RS23900 0.30 -1.3 924,467 - ABIE40_RS23900 0.30 -2.6 924,467 - ABIE40_RS23900 0.30 -2.1 924,467 - ABIE40_RS23900 0.30 -2.2 924,505 + ABIE40_RS23900 0.35 -1.5 924,506 - ABIE40_RS23900 0.35 -1.5 924,532 + ABIE40_RS23900 0.38 -0.9 924,532 + ABIE40_RS23900 0.38 -0.8 924,533 - ABIE40_RS23900 0.38 -0.2 924,533 - ABIE40_RS23900 0.38 +0.8 924,533 - ABIE40_RS23900 0.38 -0.2 924,533 - ABIE40_RS23900 0.38 -1.6 924,533 - ABIE40_RS23900 0.38 -1.0 924,533 - ABIE40_RS23900 0.38 -1.9 924,533 - ABIE40_RS23900 0.38 -0.2 924,736 - ABIE40_RS23900 0.65 -0.9 924,873 + ABIE40_RS23900 0.83 -1.6 924,950 + +0.9 924,951 - +0.8 925,004 - +1.4 925,083 - -2.1 925,084 + +0.2 925,167 + -1.9 925,168 - +0.2 925,168 - -1.3 925,188 + +0.1 925,188 + -1.2 925,189 - -2.4 925,189 - -0.8 925,189 - -0.7 925,282 + ABIE40_RS23905 0.13 -0.8 925,282 + ABIE40_RS23905 0.13 -0.8 925,282 + ABIE40_RS23905 0.13 -2.0 925,283 - ABIE40_RS23905 0.13 -0.1 925,283 - ABIE40_RS23905 0.13 -1.5 925,283 - ABIE40_RS23905 0.13 -2.6 925,501 + ABIE40_RS23905 0.39 -0.2 925,502 - ABIE40_RS23905 0.39 -3.0 925,502 - ABIE40_RS23905 0.39 -1.0 925,672 + ABIE40_RS23905 0.59 -1.0 925,723 + ABIE40_RS23905 0.65 -1.8 925,723 + ABIE40_RS23905 0.65 -1.3 925,723 + ABIE40_RS23905 0.65 -2.7 925,723 + ABIE40_RS23905 0.65 -1.3 925,905 + ABIE40_RS23905 0.87 -1.5 925,906 - ABIE40_RS23905 0.87 -3.0 925,906 - ABIE40_RS23905 0.87 -1.9 925,906 - ABIE40_RS23905 0.87 -1.1 926,108 + -1.2 926,108 + -1.4 926,109 - +0.2 926,109 - -1.4 926,289 + ABIE40_RS23910 0.25 -1.8 926,289 + ABIE40_RS23910 0.25 -3.0 926,289 + ABIE40_RS23910 0.25 -1.8 926,289 + ABIE40_RS23910 0.25 -1.5 926,289 + ABIE40_RS23910 0.25 +0.5 926,289 + ABIE40_RS23910 0.25 -2.1 926,289 + ABIE40_RS23910 0.25 -2.1 926,289 + ABIE40_RS23910 0.25 -1.5 926,289 + ABIE40_RS23910 0.25 -1.7 926,289 + ABIE40_RS23910 0.25 -3.1 926,289 + ABIE40_RS23910 0.25 -1.7 926,290 - ABIE40_RS23910 0.25 -2.7 926,290 - ABIE40_RS23910 0.25 -1.9 926,290 - ABIE40_RS23910 0.25 -1.0 926,290 - ABIE40_RS23910 0.25 -0.2 926,290 - ABIE40_RS23910 0.25 -1.2 926,290 - ABIE40_RS23910 0.25 -0.4 926,290 - ABIE40_RS23910 0.25 +0.3 926,290 - ABIE40_RS23910 0.25 -3.5 926,291 + ABIE40_RS23910 0.25 -2.3 926,291 + ABIE40_RS23910 0.25 -0.0 926,291 + ABIE40_RS23910 0.25 -1.3 926,292 - ABIE40_RS23910 0.25 -1.8 926,292 - ABIE40_RS23910 0.25 -1.6 926,331 + ABIE40_RS23910 0.31 -1.7 926,331 + ABIE40_RS23910 0.31 -2.2 926,331 + ABIE40_RS23910 0.31 -2.4 926,331 + ABIE40_RS23910 0.31 -1.8 926,332 - ABIE40_RS23910 0.31 -0.9 926,340 + ABIE40_RS23910 0.32 -3.4 926,341 - ABIE40_RS23910 0.32 -2.1 926,388 + ABIE40_RS23910 0.38 -0.8 926,389 - ABIE40_RS23910 0.39 -0.8 926,389 - ABIE40_RS23910 0.39 -2.2 926,389 - ABIE40_RS23910 0.39 -1.8 926,389 - ABIE40_RS23910 0.39 -0.8 926,389 - ABIE40_RS23910 0.39 -1.7 926,441 + ABIE40_RS23910 0.46 +0.0 926,441 + ABIE40_RS23910 0.46 -0.8 926,457 + ABIE40_RS23910 0.48 -2.6 926,484 + ABIE40_RS23910 0.52 -1.2 926,485 - ABIE40_RS23910 0.52 -1.0 926,485 - ABIE40_RS23910 0.52 -4.3 926,706 + ABIE40_RS23910 0.82 -1.0 926,706 + ABIE40_RS23910 0.82 -0.7 926,706 + ABIE40_RS23910 0.82 -0.6 926,739 + ABIE40_RS23910 0.87 -0.5 926,739 + ABIE40_RS23910 0.87 -2.6 926,740 - ABIE40_RS23910 0.87 -0.6 926,839 + -1.6 926,999 + ABIE40_RS23915 0.23 -0.5 926,999 + ABIE40_RS23915 0.23 -3.9 927,000 - ABIE40_RS23915 0.24 -2.1 927,000 - ABIE40_RS23915 0.24 -0.2 927,000 - ABIE40_RS23915 0.24 -1.9
Or see this region's nucleotide sequence