Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS01565

Experiment: D-Ribose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS01560 and ABIE40_RS01565 overlap by 1 nucleotidesABIE40_RS01565 and ABIE40_RS01570 overlap by 4 nucleotides ABIE40_RS01560: ABIE40_RS01560 - DUF917 family protein, at 306,159 to 307,256 _RS01560 ABIE40_RS01565: ABIE40_RS01565 - Zn-dependent hydrolase, at 307,256 to 308,518 _RS01565 ABIE40_RS01570: ABIE40_RS01570 - amidohydrolase family protein, at 308,515 to 309,897 _RS01570 Position (kb) 307 308 309Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 306.263 kb on + strandat 306.264 kb on - strandat 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.290 kb on + strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.291 kb on - strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.296 kb on + strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.297 kb on - strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.406 kb on + strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.407 kb on - strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.423 kb on + strand, within ABIE40_RS01560at 306.424 kb on - strand, within ABIE40_RS01560at 306.424 kb on - strand, within ABIE40_RS01560at 306.437 kb on + strand, within ABIE40_RS01560at 306.527 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.655 kb on + strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.656 kb on - strand, within ABIE40_RS01560at 306.767 kb on + strand, within ABIE40_RS01560at 306.768 kb on - strand, within ABIE40_RS01560at 306.768 kb on - strand, within ABIE40_RS01560at 306.769 kb on + strand, within ABIE40_RS01560at 306.977 kb on + strand, within ABIE40_RS01560at 306.978 kb on - strand, within ABIE40_RS01560at 307.018 kb on + strand, within ABIE40_RS01560at 307.018 kb on + strand, within ABIE40_RS01560at 307.018 kb on + strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.019 kb on - strand, within ABIE40_RS01560at 307.245 kb on + strandat 307.245 kb on + strandat 307.246 kb on - strandat 307.530 kb on + strand, within ABIE40_RS01565at 307.530 kb on + strand, within ABIE40_RS01565at 307.531 kb on - strand, within ABIE40_RS01565at 307.531 kb on - strand, within ABIE40_RS01565at 307.583 kb on + strand, within ABIE40_RS01565at 307.584 kb on - strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 307.834 kb on + strand, within ABIE40_RS01565at 308.309 kb on - strand, within ABIE40_RS01565at 308.388 kb on + strand, within ABIE40_RS01565at 308.388 kb on + strand, within ABIE40_RS01565at 308.389 kb on - strand, within ABIE40_RS01565at 308.389 kb on - strand, within ABIE40_RS01565at 308.389 kb on - strand, within ABIE40_RS01565at 308.473 kb on + strandat 308.473 kb on + strandat 308.474 kb on - strandat 308.474 kb on - strandat 308.485 kb on + strandat 308.605 kb on + strandat 308.624 kb on + strandat 308.624 kb on + strandat 308.625 kb on - strandat 308.625 kb on - strandat 308.663 kb on + strand, within ABIE40_RS01570at 308.663 kb on + strand, within ABIE40_RS01570at 308.663 kb on + strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.664 kb on - strand, within ABIE40_RS01570at 308.708 kb on + strand, within ABIE40_RS01570at 308.708 kb on + strand, within ABIE40_RS01570at 308.708 kb on + strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.709 kb on - strand, within ABIE40_RS01570at 308.919 kb on + strand, within ABIE40_RS01570at 308.920 kb on - strand, within ABIE40_RS01570at 308.920 kb on - strand, within ABIE40_RS01570at 309.098 kb on + strand, within ABIE40_RS01570at 309.099 kb on - strand, within ABIE40_RS01570at 309.099 kb on - strand, within ABIE40_RS01570at 309.207 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.231 kb on + strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.232 kb on - strand, within ABIE40_RS01570at 309.318 kb on + strand, within ABIE40_RS01570at 309.318 kb on + strand, within ABIE40_RS01570at 309.319 kb on - strand, within ABIE40_RS01570at 309.319 kb on - strand, within ABIE40_RS01570at 309.320 kb on + strand, within ABIE40_RS01570at 309.320 kb on + strand, within ABIE40_RS01570at 309.320 kb on + strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.321 kb on - strand, within ABIE40_RS01570at 309.418 kb on - strand, within ABIE40_RS01570

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Ribose (C)
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306,263 + +0.4
306,264 - -1.5
306,290 + ABIE40_RS01560 0.12 -0.3
306,290 + ABIE40_RS01560 0.12 -0.7
306,290 + ABIE40_RS01560 0.12 -0.5
306,290 + ABIE40_RS01560 0.12 +0.4
306,290 + ABIE40_RS01560 0.12 +0.8
306,290 + ABIE40_RS01560 0.12 +1.3
306,290 + ABIE40_RS01560 0.12 -0.4
306,290 + ABIE40_RS01560 0.12 +0.7
306,290 + ABIE40_RS01560 0.12 -0.5
306,291 - ABIE40_RS01560 0.12 -0.8
306,291 - ABIE40_RS01560 0.12 -0.0
306,291 - ABIE40_RS01560 0.12 -2.2
306,291 - ABIE40_RS01560 0.12 -0.1
306,291 - ABIE40_RS01560 0.12 +0.6
306,291 - ABIE40_RS01560 0.12 +0.8
306,291 - ABIE40_RS01560 0.12 -0.0
306,296 + ABIE40_RS01560 0.12 +1.5
306,296 + ABIE40_RS01560 0.12 +0.4
306,296 + ABIE40_RS01560 0.12 +2.6
306,296 + ABIE40_RS01560 0.12 +0.3
306,296 + ABIE40_RS01560 0.12 -0.9
306,296 + ABIE40_RS01560 0.12 +0.3
306,296 + ABIE40_RS01560 0.12 +0.2
306,296 + ABIE40_RS01560 0.12 +0.1
306,296 + ABIE40_RS01560 0.12 -0.1
306,296 + ABIE40_RS01560 0.12 -0.3
306,296 + ABIE40_RS01560 0.12 +0.5
306,296 + ABIE40_RS01560 0.12 -0.2
306,296 + ABIE40_RS01560 0.12 -0.2
306,296 + ABIE40_RS01560 0.12 -0.2
306,296 + ABIE40_RS01560 0.12 -0.4
306,296 + ABIE40_RS01560 0.12 +0.5
306,297 - ABIE40_RS01560 0.13 -0.0
306,297 - ABIE40_RS01560 0.13 -0.5
306,297 - ABIE40_RS01560 0.13 +0.6
306,297 - ABIE40_RS01560 0.13 -0.1
306,297 - ABIE40_RS01560 0.13 -0.5
306,297 - ABIE40_RS01560 0.13 -0.8
306,297 - ABIE40_RS01560 0.13 +0.4
306,297 - ABIE40_RS01560 0.13 +0.1
306,297 - ABIE40_RS01560 0.13 -2.3
306,297 - ABIE40_RS01560 0.13 -1.4
306,297 - ABIE40_RS01560 0.13 -0.2
306,297 - ABIE40_RS01560 0.13 +0.1
306,297 - ABIE40_RS01560 0.13 -0.7
306,297 - ABIE40_RS01560 0.13 -0.1
306,297 - ABIE40_RS01560 0.13 +0.1
306,297 - ABIE40_RS01560 0.13 +0.8
306,297 - ABIE40_RS01560 0.13 -0.0
306,297 - ABIE40_RS01560 0.13 +0.6
306,297 - ABIE40_RS01560 0.13 +0.0
306,297 - ABIE40_RS01560 0.13 -0.5
306,406 + ABIE40_RS01560 0.22 +0.5
306,406 + ABIE40_RS01560 0.22 -0.6
306,406 + ABIE40_RS01560 0.22 +0.4
306,406 + ABIE40_RS01560 0.22 +0.5
306,407 - ABIE40_RS01560 0.23 -0.3
306,407 - ABIE40_RS01560 0.23 +1.1
306,407 - ABIE40_RS01560 0.23 +0.0
306,407 - ABIE40_RS01560 0.23 -0.6
306,423 + ABIE40_RS01560 0.24 +1.2
306,423 + ABIE40_RS01560 0.24 +0.7
306,423 + ABIE40_RS01560 0.24 +0.8
306,423 + ABIE40_RS01560 0.24 +0.2
306,423 + ABIE40_RS01560 0.24 -0.4
306,423 + ABIE40_RS01560 0.24 +0.2
306,423 + ABIE40_RS01560 0.24 +0.5
306,424 - ABIE40_RS01560 0.24 -0.2
306,424 - ABIE40_RS01560 0.24 -0.0
306,437 + ABIE40_RS01560 0.25 +2.5
306,527 + ABIE40_RS01560 0.34 +0.1
306,655 + ABIE40_RS01560 0.45 -0.2
306,655 + ABIE40_RS01560 0.45 +0.8
306,655 + ABIE40_RS01560 0.45 +1.0
306,655 + ABIE40_RS01560 0.45 +0.6
306,655 + ABIE40_RS01560 0.45 +1.3
306,655 + ABIE40_RS01560 0.45 +0.7
306,656 - ABIE40_RS01560 0.45 -0.9
306,656 - ABIE40_RS01560 0.45 +1.0
306,656 - ABIE40_RS01560 0.45 -1.0
306,656 - ABIE40_RS01560 0.45 +0.2
306,656 - ABIE40_RS01560 0.45 +1.5
306,656 - ABIE40_RS01560 0.45 -0.6
306,656 - ABIE40_RS01560 0.45 +0.2
306,656 - ABIE40_RS01560 0.45 -0.4
306,767 + ABIE40_RS01560 0.55 -0.0
306,768 - ABIE40_RS01560 0.55 -0.5
306,768 - ABIE40_RS01560 0.55 +0.2
306,769 + ABIE40_RS01560 0.56 -0.4
306,977 + ABIE40_RS01560 0.74 -0.4
306,978 - ABIE40_RS01560 0.75 +0.6
307,018 + ABIE40_RS01560 0.78 -0.5
307,018 + ABIE40_RS01560 0.78 -0.5
307,018 + ABIE40_RS01560 0.78 -0.7
307,019 - ABIE40_RS01560 0.78 +0.0
307,019 - ABIE40_RS01560 0.78 -0.7
307,019 - ABIE40_RS01560 0.78 -1.8
307,019 - ABIE40_RS01560 0.78 -0.7
307,019 - ABIE40_RS01560 0.78 +0.0
307,019 - ABIE40_RS01560 0.78 -0.4
307,245 + +0.4
307,245 + -1.2
307,246 - -0.3
307,530 + ABIE40_RS01565 0.22 -0.6
307,530 + ABIE40_RS01565 0.22 -3.3
307,531 - ABIE40_RS01565 0.22 -2.2
307,531 - ABIE40_RS01565 0.22 -1.4
307,583 + ABIE40_RS01565 0.26 -4.4
307,584 - ABIE40_RS01565 0.26 -3.5
307,834 + ABIE40_RS01565 0.46 -2.5
307,834 + ABIE40_RS01565 0.46 -1.9
307,834 + ABIE40_RS01565 0.46 -3.9
308,309 - ABIE40_RS01565 0.83 -4.4
308,388 + ABIE40_RS01565 0.90 -2.4
308,388 + ABIE40_RS01565 0.90 -4.6
308,389 - ABIE40_RS01565 0.90 -3.4
308,389 - ABIE40_RS01565 0.90 -3.2
308,389 - ABIE40_RS01565 0.90 -2.8
308,473 + -4.0
308,473 + -4.9
308,474 - -5.0
308,474 - -1.2
308,485 + -2.7
308,605 + -4.2
308,624 + +1.8
308,624 + -5.7
308,625 - +0.2
308,625 - +1.8
308,663 + ABIE40_RS01570 0.11 -2.0
308,663 + ABIE40_RS01570 0.11 -3.4
308,663 + ABIE40_RS01570 0.11 -3.9
308,664 - ABIE40_RS01570 0.11 +0.7
308,664 - ABIE40_RS01570 0.11 -0.5
308,664 - ABIE40_RS01570 0.11 +2.0
308,664 - ABIE40_RS01570 0.11 -0.9
308,664 - ABIE40_RS01570 0.11 +0.5
308,664 - ABIE40_RS01570 0.11 +0.1
308,664 - ABIE40_RS01570 0.11 +0.5
308,708 + ABIE40_RS01570 0.14 -3.4
308,708 + ABIE40_RS01570 0.14 -4.9
308,708 + ABIE40_RS01570 0.14 -4.1
308,709 - ABIE40_RS01570 0.14 -0.1
308,709 - ABIE40_RS01570 0.14 +1.3
308,709 - ABIE40_RS01570 0.14 +0.7
308,709 - ABIE40_RS01570 0.14 +1.1
308,919 + ABIE40_RS01570 0.29 -0.6
308,920 - ABIE40_RS01570 0.29 -2.4
308,920 - ABIE40_RS01570 0.29 -0.9
309,098 + ABIE40_RS01570 0.42 -4.9
309,099 - ABIE40_RS01570 0.42 -4.1
309,099 - ABIE40_RS01570 0.42 -1.7
309,207 + ABIE40_RS01570 0.50 -0.8
309,231 + ABIE40_RS01570 0.52 -1.0
309,231 + ABIE40_RS01570 0.52 -3.4
309,231 + ABIE40_RS01570 0.52 -2.3
309,231 + ABIE40_RS01570 0.52 -3.3
309,231 + ABIE40_RS01570 0.52 -1.7
309,231 + ABIE40_RS01570 0.52 -3.3
309,231 + ABIE40_RS01570 0.52 -4.6
309,231 + ABIE40_RS01570 0.52 -1.6
309,231 + ABIE40_RS01570 0.52 -4.7
309,231 + ABIE40_RS01570 0.52 -4.1
309,232 - ABIE40_RS01570 0.52 -0.6
309,232 - ABIE40_RS01570 0.52 -1.4
309,232 - ABIE40_RS01570 0.52 -2.9
309,232 - ABIE40_RS01570 0.52 -3.3
309,232 - ABIE40_RS01570 0.52 -5.2
309,232 - ABIE40_RS01570 0.52 -5.0
309,232 - ABIE40_RS01570 0.52 -2.4
309,318 + ABIE40_RS01570 0.58 -1.0
309,318 + ABIE40_RS01570 0.58 -1.4
309,319 - ABIE40_RS01570 0.58 -3.7
309,319 - ABIE40_RS01570 0.58 -4.1
309,320 + ABIE40_RS01570 0.58 -3.4
309,320 + ABIE40_RS01570 0.58 -3.6
309,320 + ABIE40_RS01570 0.58 -3.5
309,321 - ABIE40_RS01570 0.58 -3.8
309,321 - ABIE40_RS01570 0.58 -3.8
309,321 - ABIE40_RS01570 0.58 -2.0
309,321 - ABIE40_RS01570 0.58 -1.0
309,321 - ABIE40_RS01570 0.58 -2.6
309,321 - ABIE40_RS01570 0.58 -3.7
309,418 - ABIE40_RS01570 0.65 -2.6

Or see this region's nucleotide sequence