Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21425 and ABID97_RS21430 overlap by 8 nucleotides ABID97_RS21430 and ABID97_RS21435 are separated by 6 nucleotides ABID97_RS21435 and ABID97_RS21440 are separated by 9 nucleotides ABID97_RS21440 and ABID97_RS21445 are separated by 151 nucleotides ABID97_RS21445 and ABID97_RS21450 are separated by 50 nucleotides
ABID97_RS21425: ABID97_RS21425 - sigma-70 family RNA polymerase sigma factor, at 4,419,849 to 4,420,466
_RS21425
ABID97_RS21430: ABID97_RS21430 - iron dicitrate transport regulator FecR, at 4,420,459 to 4,420,692
_RS21430
ABID97_RS21435: ABID97_RS21435 - hypothetical protein, at 4,420,699 to 4,420,950
_RS21435
ABID97_RS21440: ABID97_RS21440 - cyclic peptide export ABC transporter, at 4,420,960 to 4,422,654
_RS21440
ABID97_RS21445: ABID97_RS21445 - siderophore-iron reductase FhuF, at 4,422,806 to 4,423,534
_RS21445
ABID97_RS21450: ABID97_RS21450 - formyltransferase family protein, at 4,423,585 to 4,424,436
_RS21450
Position (kb) 4420
4421
4422
4423 Strain fitness (log2 ratio) -2
-1
0
1 at 4419.969 kb on + strand, within ABID97_RS21425 at 4419.970 kb on - strand, within ABID97_RS21425 at 4420.278 kb on + strand, within ABID97_RS21425 at 4420.279 kb on - strand, within ABID97_RS21425 at 4420.686 kb on + strand at 4420.686 kb on + strand at 4420.690 kb on + strand at 4421.120 kb on + strand at 4421.121 kb on - strand at 4421.121 kb on - strand at 4421.195 kb on + strand, within ABID97_RS21440 at 4421.304 kb on - strand, within ABID97_RS21440 at 4421.384 kb on + strand, within ABID97_RS21440 at 4421.486 kb on + strand, within ABID97_RS21440 at 4421.486 kb on + strand, within ABID97_RS21440 at 4421.627 kb on + strand, within ABID97_RS21440 at 4421.627 kb on + strand, within ABID97_RS21440 at 4421.628 kb on - strand, within ABID97_RS21440 at 4421.933 kb on + strand, within ABID97_RS21440 at 4421.933 kb on + strand, within ABID97_RS21440 at 4421.933 kb on + strand, within ABID97_RS21440 at 4421.934 kb on - strand, within ABID97_RS21440 at 4421.934 kb on - strand, within ABID97_RS21440 at 4421.934 kb on - strand, within ABID97_RS21440 at 4421.934 kb on - strand, within ABID97_RS21440 at 4422.207 kb on - strand, within ABID97_RS21440 at 4422.324 kb on - strand, within ABID97_RS21440 at 4422.649 kb on - strand at 4422.703 kb on + strand at 4422.704 kb on - strand at 4422.710 kb on + strand at 4423.019 kb on + strand, within ABID97_RS21445 at 4423.020 kb on - strand, within ABID97_RS21445
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 4,419,969 + ABID97_RS21425 0.19 +0.1 4,419,970 - ABID97_RS21425 0.20 +0.5 4,420,278 + ABID97_RS21425 0.69 +0.2 4,420,279 - ABID97_RS21425 0.70 -0.3 4,420,686 + -0.4 4,420,686 + +0.1 4,420,690 + -0.1 4,421,120 + +0.5 4,421,121 - +0.0 4,421,121 - -0.2 4,421,195 + ABID97_RS21440 0.14 +0.4 4,421,304 - ABID97_RS21440 0.20 -0.3 4,421,384 + ABID97_RS21440 0.25 +0.1 4,421,486 + ABID97_RS21440 0.31 +0.4 4,421,486 + ABID97_RS21440 0.31 +1.2 4,421,627 + ABID97_RS21440 0.39 +1.1 4,421,627 + ABID97_RS21440 0.39 +0.8 4,421,628 - ABID97_RS21440 0.39 +0.2 4,421,933 + ABID97_RS21440 0.57 -1.9 4,421,933 + ABID97_RS21440 0.57 -0.2 4,421,933 + ABID97_RS21440 0.57 -0.4 4,421,934 - ABID97_RS21440 0.57 -0.0 4,421,934 - ABID97_RS21440 0.57 -0.2 4,421,934 - ABID97_RS21440 0.57 -0.2 4,421,934 - ABID97_RS21440 0.57 -0.2 4,422,207 - ABID97_RS21440 0.74 -0.1 4,422,324 - ABID97_RS21440 0.80 +0.1 4,422,649 - -0.5 4,422,703 + -1.5 4,422,704 - -0.1 4,422,710 + +0.4 4,423,019 + ABID97_RS21445 0.29 +0.1 4,423,020 - ABID97_RS21445 0.29 +0.2
Or see this region's nucleotide sequence