Strain Fitness in Variovorax sp. OAS795 around ABID97_RS18515

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS18510 and ABID97_RS18515 are separated by 142 nucleotidesABID97_RS18515 and ABID97_RS18520 are separated by 37 nucleotides ABID97_RS18510: ABID97_RS18510 - acyl-CoA dehydrogenase family protein, at 3,814,726 to 3,815,889 _RS18510 ABID97_RS18515: ABID97_RS18515 - TetR/AcrR family transcriptional regulator, at 3,816,032 to 3,816,625 _RS18515 ABID97_RS18520: ABID97_RS18520 - ABC transporter substrate-binding protein, at 3,816,663 to 3,817,808 _RS18520 Position (kb) 3816 3817Strain fitness (log2 ratio) -1 0 1at 3815.069 kb on + strand, within ABID97_RS18510at 3815.069 kb on + strand, within ABID97_RS18510at 3815.162 kb on + strand, within ABID97_RS18510at 3815.162 kb on + strand, within ABID97_RS18510at 3815.537 kb on + strand, within ABID97_RS18510at 3815.584 kb on - strand, within ABID97_RS18510at 3816.056 kb on + strandat 3816.177 kb on - strand, within ABID97_RS18515at 3816.482 kb on + strand, within ABID97_RS18515at 3816.491 kb on + strand, within ABID97_RS18515at 3816.982 kb on + strand, within ABID97_RS18520at 3816.983 kb on - strand, within ABID97_RS18520at 3817.421 kb on - strand, within ABID97_RS18520

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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3,815,069 + ABID97_RS18510 0.29 -1.6
3,815,069 + ABID97_RS18510 0.29 +1.5
3,815,162 + ABID97_RS18510 0.37 -0.1
3,815,162 + ABID97_RS18510 0.37 +0.3
3,815,537 + ABID97_RS18510 0.70 -0.3
3,815,584 - ABID97_RS18510 0.74 -1.1
3,816,056 + -1.3
3,816,177 - ABID97_RS18515 0.24 -0.4
3,816,482 + ABID97_RS18515 0.76 -0.2
3,816,491 + ABID97_RS18515 0.77 -0.6
3,816,982 + ABID97_RS18520 0.28 +0.1
3,816,983 - ABID97_RS18520 0.28 +0.5
3,817,421 - ABID97_RS18520 0.66 +0.3

Or see this region's nucleotide sequence