Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS15075 and ABID97_RS15080 are separated by 151 nucleotides ABID97_RS15080 and ABID97_RS15085 overlap by 4 nucleotides ABID97_RS15085 and ABID97_RS15090 are separated by 55 nucleotides ABID97_RS15090 and ABID97_RS15095 are separated by 29 nucleotides ABID97_RS15095 and ABID97_RS15100 are separated by 89 nucleotides
ABID97_RS15075: ABID97_RS15075 - toprim domain-containing protein, at 3,128,206 to 3,131,058
_RS15075
ABID97_RS15080: ABID97_RS15080 - ogr/Delta-like zinc finger family protein, at 3,131,210 to 3,131,533
_RS15080
ABID97_RS15085: ABID97_RS15085 - hypothetical protein, at 3,131,530 to 3,131,733
_RS15085
ABID97_RS15090: ABID97_RS15090 - hypothetical protein, at 3,131,789 to 3,131,983
_RS15090
ABID97_RS15095: ABID97_RS15095 - hypothetical protein, at 3,132,013 to 3,132,216
_RS15095
ABID97_RS15100: ABID97_RS15100 - helix-turn-helix transcriptional regulator, at 3,132,306 to 3,132,626
_RS15100
Position (kb) 3131
3132 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 3130.709 kb on + strand, within ABID97_RS15075 at 3130.709 kb on + strand, within ABID97_RS15075 at 3130.710 kb on - strand, within ABID97_RS15075 at 3130.929 kb on - strand at 3130.979 kb on + strand at 3131.452 kb on - strand, within ABID97_RS15080 at 3131.452 kb on - strand, within ABID97_RS15080 at 3131.452 kb on - strand, within ABID97_RS15080 at 3131.570 kb on + strand, within ABID97_RS15085 at 3131.571 kb on - strand, within ABID97_RS15085 at 3131.976 kb on + strand at 3131.976 kb on + strand at 3132.138 kb on - strand, within ABID97_RS15095 at 3132.411 kb on + strand, within ABID97_RS15100 at 3132.411 kb on + strand, within ABID97_RS15100 at 3132.445 kb on - strand, within ABID97_RS15100 at 3132.581 kb on - strand, within ABID97_RS15100 at 3132.584 kb on + strand, within ABID97_RS15100 at 3132.643 kb on - strand at 3132.675 kb on + strand at 3132.676 kb on - strand at 3132.679 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,130,709 + ABID97_RS15075 0.88 -0.1 3,130,709 + ABID97_RS15075 0.88 -0.4 3,130,710 - ABID97_RS15075 0.88 +0.1 3,130,929 - +0.4 3,130,979 + -0.3 3,131,452 - ABID97_RS15080 0.75 -0.1 3,131,452 - ABID97_RS15080 0.75 +0.3 3,131,452 - ABID97_RS15080 0.75 -0.1 3,131,570 + ABID97_RS15085 0.20 -0.8 3,131,571 - ABID97_RS15085 0.20 -1.3 3,131,976 + -0.2 3,131,976 + +0.4 3,132,138 - ABID97_RS15095 0.61 +0.5 3,132,411 + ABID97_RS15100 0.33 +0.9 3,132,411 + ABID97_RS15100 0.33 +0.4 3,132,445 - ABID97_RS15100 0.43 -2.9 3,132,581 - ABID97_RS15100 0.86 -0.5 3,132,584 + ABID97_RS15100 0.87 -1.1 3,132,643 - +0.4 3,132,675 + -0.0 3,132,676 - +0.7 3,132,679 + -0.3
Or see this region's nucleotide sequence