Strain Fitness in Variovorax sp. OAS795 around ABID97_RS13170

Experiment: D,L-Lactate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS13165 and ABID97_RS13170 are separated by 43 nucleotidesABID97_RS13170 and ABID97_RS13175 are separated by 1 nucleotidesABID97_RS13175 and ABID97_RS13180 overlap by 4 nucleotides ABID97_RS13165: ABID97_RS13165 - PDR/VanB family oxidoreductase, at 2,742,960 to 2,743,916 _RS13165 ABID97_RS13170: ABID97_RS13170 - ABC transporter ATP-binding protein, at 2,743,960 to 2,744,673 _RS13170 ABID97_RS13175: ABID97_RS13175 - ABC transporter ATP-binding protein, at 2,744,675 to 2,745,415 _RS13175 ABID97_RS13180: ABID97_RS13180 - branched-chain amino acid ABC transporter permease, at 2,745,412 to 2,746,401 _RS13180 Position (kb) 2743 2744 2745Strain fitness (log2 ratio) -2 -1 0 1at 2743.262 kb on - strand, within ABID97_RS13165at 2743.348 kb on + strand, within ABID97_RS13165at 2743.348 kb on + strand, within ABID97_RS13165at 2743.349 kb on - strand, within ABID97_RS13165at 2743.502 kb on - strand, within ABID97_RS13165at 2743.760 kb on - strand, within ABID97_RS13165at 2743.760 kb on - strand, within ABID97_RS13165at 2744.423 kb on + strand, within ABID97_RS13170at 2744.423 kb on + strand, within ABID97_RS13170at 2744.789 kb on + strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.790 kb on - strand, within ABID97_RS13175at 2744.819 kb on + strand, within ABID97_RS13175at 2744.968 kb on - strand, within ABID97_RS13175at 2745.234 kb on - strand, within ABID97_RS13175

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Per-strain Table

Position Strand Gene LocusTag Fraction D,L-Lactate (C)
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2,743,262 - ABID97_RS13165 0.32 +0.5
2,743,348 + ABID97_RS13165 0.41 +0.0
2,743,348 + ABID97_RS13165 0.41 -0.4
2,743,349 - ABID97_RS13165 0.41 +0.8
2,743,502 - ABID97_RS13165 0.57 +0.0
2,743,760 - ABID97_RS13165 0.84 +0.4
2,743,760 - ABID97_RS13165 0.84 +0.5
2,744,423 + ABID97_RS13170 0.65 -2.1
2,744,423 + ABID97_RS13170 0.65 -1.0
2,744,789 + ABID97_RS13175 0.15 +0.4
2,744,790 - ABID97_RS13175 0.16 -0.3
2,744,790 - ABID97_RS13175 0.16 +0.9
2,744,790 - ABID97_RS13175 0.16 +1.7
2,744,819 + ABID97_RS13175 0.19 +0.3
2,744,968 - ABID97_RS13175 0.40 -0.5
2,745,234 - ABID97_RS13175 0.75 -0.5

Or see this region's nucleotide sequence