Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS13165 and ABID97_RS13170 are separated by 43 nucleotides ABID97_RS13170 and ABID97_RS13175 are separated by 1 nucleotides ABID97_RS13175 and ABID97_RS13180 overlap by 4 nucleotides
ABID97_RS13165: ABID97_RS13165 - PDR/VanB family oxidoreductase, at 2,742,960 to 2,743,916
_RS13165
ABID97_RS13170: ABID97_RS13170 - ABC transporter ATP-binding protein, at 2,743,960 to 2,744,673
_RS13170
ABID97_RS13175: ABID97_RS13175 - ABC transporter ATP-binding protein, at 2,744,675 to 2,745,415
_RS13175
ABID97_RS13180: ABID97_RS13180 - branched-chain amino acid ABC transporter permease, at 2,745,412 to 2,746,401
_RS13180
Position (kb)
2743
2744
2745 Strain fitness (log2 ratio)
-2
-1
0
1 at 2743.262 kb on - strand, within ABID97_RS13165 at 2743.348 kb on + strand, within ABID97_RS13165 at 2743.348 kb on + strand, within ABID97_RS13165 at 2743.349 kb on - strand, within ABID97_RS13165 at 2743.502 kb on - strand, within ABID97_RS13165 at 2743.760 kb on - strand, within ABID97_RS13165 at 2743.760 kb on - strand, within ABID97_RS13165 at 2744.423 kb on + strand, within ABID97_RS13170 at 2744.423 kb on + strand, within ABID97_RS13170 at 2744.789 kb on + strand, within ABID97_RS13175 at 2744.790 kb on - strand, within ABID97_RS13175 at 2744.790 kb on - strand, within ABID97_RS13175 at 2744.790 kb on - strand, within ABID97_RS13175 at 2744.819 kb on + strand, within ABID97_RS13175 at 2744.968 kb on - strand, within ABID97_RS13175 at 2745.234 kb on - strand, within ABID97_RS13175
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 2,743,262 - ABID97_RS13165 0.32 +0.5 2,743,348 + ABID97_RS13165 0.41 +0.0 2,743,348 + ABID97_RS13165 0.41 -0.4 2,743,349 - ABID97_RS13165 0.41 +0.8 2,743,502 - ABID97_RS13165 0.57 +0.0 2,743,760 - ABID97_RS13165 0.84 +0.4 2,743,760 - ABID97_RS13165 0.84 +0.5 2,744,423 + ABID97_RS13170 0.65 -2.1 2,744,423 + ABID97_RS13170 0.65 -1.0 2,744,789 + ABID97_RS13175 0.15 +0.4 2,744,790 - ABID97_RS13175 0.16 -0.3 2,744,790 - ABID97_RS13175 0.16 +0.9 2,744,790 - ABID97_RS13175 0.16 +1.7 2,744,819 + ABID97_RS13175 0.19 +0.3 2,744,968 - ABID97_RS13175 0.40 -0.5 2,745,234 - ABID97_RS13175 0.75 -0.5
Or see this region's nucleotide sequence