Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS04470 and ABID97_RS04475 are separated by 3 nucleotides ABID97_RS04475 and ABID97_RS04480 overlap by 8 nucleotides ABID97_RS04480 and ABID97_RS04485 are separated by 217 nucleotides
ABID97_RS04470: ABID97_RS04470 - ABC transporter substrate-binding protein, at 925,725 to 927,359
_RS04470
ABID97_RS04475: ABID97_RS04475 - 5'-methylthioadenosine/adenosylhomocysteine nucleosidase, at 927,363 to 928,148
_RS04475
ABID97_RS04480: ABID97_RS04480 - magnesium/cobalt transporter CorA, at 928,141 to 929,127
_RS04480
ABID97_RS04485: ABID97_RS04485 - ATP-dependent helicase, at 929,345 to 931,462
_RS04485
Position (kb) 928
929
930 Strain fitness (log2 ratio) -2
-1
0
1 at 927.142 kb on - strand, within ABID97_RS04470 at 927.210 kb on + strand at 927.210 kb on + strand at 927.211 kb on - strand at 927.339 kb on + strand at 927.339 kb on + strand at 927.340 kb on - strand at 927.340 kb on - strand at 928.078 kb on - strand at 928.169 kb on + strand at 928.169 kb on + strand at 928.214 kb on + strand at 928.644 kb on - strand, within ABID97_RS04480 at 928.671 kb on - strand, within ABID97_RS04480 at 928.925 kb on + strand, within ABID97_RS04480 at 928.925 kb on + strand, within ABID97_RS04480 at 928.925 kb on + strand, within ABID97_RS04480 at 928.926 kb on - strand, within ABID97_RS04480 at 928.988 kb on + strand, within ABID97_RS04480 at 928.989 kb on - strand, within ABID97_RS04480 at 929.282 kb on + strand at 929.282 kb on + strand at 929.327 kb on + strand at 929.327 kb on + strand at 929.328 kb on - strand at 929.328 kb on - strand at 929.328 kb on - strand at 929.742 kb on - strand, within ABID97_RS04485 at 929.886 kb on - strand, within ABID97_RS04485 at 929.886 kb on - strand, within ABID97_RS04485 at 929.990 kb on + strand, within ABID97_RS04485 at 930.026 kb on + strand, within ABID97_RS04485 at 930.027 kb on - strand, within ABID97_RS04485 at 930.045 kb on - strand, within ABID97_RS04485 at 930.045 kb on - strand, within ABID97_RS04485 at 930.123 kb on - strand, within ABID97_RS04485
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 927,142 - ABID97_RS04470 0.87 -0.3 927,210 + -0.1 927,210 + +0.3 927,211 - -1.0 927,339 + -0.2 927,339 + -0.3 927,340 - -0.3 927,340 - -1.0 928,078 - +0.1 928,169 + +0.7 928,169 + -0.9 928,214 + -0.9 928,644 - ABID97_RS04480 0.51 -1.6 928,671 - ABID97_RS04480 0.54 -0.6 928,925 + ABID97_RS04480 0.79 +0.7 928,925 + ABID97_RS04480 0.79 -0.1 928,925 + ABID97_RS04480 0.79 +0.4 928,926 - ABID97_RS04480 0.80 +0.7 928,988 + ABID97_RS04480 0.86 +0.7 928,989 - ABID97_RS04480 0.86 -1.3 929,282 + -0.3 929,282 + +0.8 929,327 + -0.0 929,327 + -0.3 929,328 - +0.2 929,328 - -0.6 929,328 - -1.9 929,742 - ABID97_RS04485 0.19 +1.3 929,886 - ABID97_RS04485 0.26 +0.5 929,886 - ABID97_RS04485 0.26 -0.3 929,990 + ABID97_RS04485 0.30 +0.8 930,026 + ABID97_RS04485 0.32 +1.1 930,027 - ABID97_RS04485 0.32 -0.4 930,045 - ABID97_RS04485 0.33 +0.6 930,045 - ABID97_RS04485 0.33 +0.5 930,123 - ABID97_RS04485 0.37 -0.5
Or see this region's nucleotide sequence