Strain Fitness in Escherichia coli BW25113 around b3904

Experiment: L-Fucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntrhaA and rhaB overlap by 4 nucleotidesrhaB and rhaS are separated by 287 nucleotides b3903: rhaA - L-rhamnose isomerase (NCBI), at 4,092,746 to 4,094,005 rhaA b3904: rhaB - rhamnulokinase (NCBI), at 4,094,002 to 4,095,471 rhaB b3905: rhaS - DNA-binding transcriptional activator, L-rhamnose-binding (NCBI), at 4,095,759 to 4,096,595 rhaS Position (kb) 4094 4095 4096Strain fitness (log2 ratio) -1 0 1at 4095.503 kb on + strandat 4095.503 kb on + strandat 4095.773 kb on - strandat 4095.834 kb on - strandat 4095.917 kb on + strand, within rhaSat 4095.925 kb on - strand, within rhaSat 4095.925 kb on - strand, within rhaSat 4095.925 kb on - strand, within rhaSat 4095.925 kb on - strand, within rhaSat 4095.929 kb on - strand, within rhaSat 4095.980 kb on - strand, within rhaSat 4095.980 kb on - strand, within rhaSat 4096.005 kb on + strand, within rhaSat 4096.009 kb on - strand, within rhaSat 4096.071 kb on - strand, within rhaSat 4096.085 kb on + strand, within rhaSat 4096.093 kb on - strand, within rhaSat 4096.093 kb on - strand, within rhaSat 4096.128 kb on + strand, within rhaSat 4096.139 kb on - strand, within rhaSat 4096.192 kb on + strand, within rhaSat 4096.192 kb on + strand, within rhaSat 4096.204 kb on + strand, within rhaSat 4096.204 kb on + strand, within rhaSat 4096.251 kb on + strand, within rhaSat 4096.256 kb on + strand, within rhaSat 4096.416 kb on - strand, within rhaSat 4096.421 kb on - strand, within rhaSat 4096.421 kb on - strand, within rhaSat 4096.421 kb on - strand, within rhaSat 4096.423 kb on + strand, within rhaSat 4096.423 kb on + strand, within rhaS

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Fucose (C)
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4,095,503 + -1.4
4,095,503 + +1.0
4,095,773 - +0.1
4,095,834 - +0.2
4,095,917 + rhaS b3905 0.19 -0.3
4,095,925 - rhaS b3905 0.20 +1.1
4,095,925 - rhaS b3905 0.20 +0.1
4,095,925 - rhaS b3905 0.20 -1.4
4,095,925 - rhaS b3905 0.20 -1.2
4,095,929 - rhaS b3905 0.20 +0.7
4,095,980 - rhaS b3905 0.26 +0.1
4,095,980 - rhaS b3905 0.26 +0.9
4,096,005 + rhaS b3905 0.29 +0.1
4,096,009 - rhaS b3905 0.30 -0.1
4,096,071 - rhaS b3905 0.37 -0.5
4,096,085 + rhaS b3905 0.39 +0.1
4,096,093 - rhaS b3905 0.40 +0.6
4,096,093 - rhaS b3905 0.40 -1.3
4,096,128 + rhaS b3905 0.44 -0.2
4,096,139 - rhaS b3905 0.45 -1.2
4,096,192 + rhaS b3905 0.52 +0.3
4,096,192 + rhaS b3905 0.52 -0.1
4,096,204 + rhaS b3905 0.53 -0.2
4,096,204 + rhaS b3905 0.53 -0.1
4,096,251 + rhaS b3905 0.59 +0.0
4,096,256 + rhaS b3905 0.59 +0.8
4,096,416 - rhaS b3905 0.78 +0.1
4,096,421 - rhaS b3905 0.79 -0.1
4,096,421 - rhaS b3905 0.79 -0.3
4,096,421 - rhaS b3905 0.79 +0.7
4,096,423 + rhaS b3905 0.79 +0.3
4,096,423 + rhaS b3905 0.79 +1.1

Or see this region's nucleotide sequence