Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt mlrA and yohO are separated by 59 nucleotides yohO and yehW overlap by 20 nucleotides yehW and yehX are separated by 4 nucleotides yehX and yehY overlap by 8 nucleotides
b2127: mlrA - DNA-binding transcriptional regulator (NCBI), at 2,212,888 to 2,213,619
mlrA
b4542: yohO - hypothetical protein (NCBI), at 2,213,679 to 2,213,786
yohO
b2128: yehW - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 2,213,767 to 2,214,498
yehW
b2129: yehX - predicted transporter subunit: ATP-binding component of ABC superfamily (NCBI), at 2,214,503 to 2,215,429
yehX
b2130: yehY - predicted transporter subunit: membrane component of ABC superfamily (NCBI), at 2,215,422 to 2,216,579
yehY
Position (kb)
2214
2215
2216 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 2213.506 kb on + strand, within mlrA at 2213.506 kb on + strand, within mlrA at 2213.513 kb on + strand, within mlrA at 2213.641 kb on + strand at 2213.641 kb on + strand at 2213.646 kb on + strand at 2213.654 kb on - strand at 2213.684 kb on - strand at 2213.781 kb on + strand at 2213.819 kb on + strand at 2213.903 kb on - strand, within yehW at 2213.988 kb on - strand, within yehW at 2214.022 kb on - strand, within yehW at 2214.159 kb on + strand, within yehW at 2214.356 kb on - strand, within yehW at 2214.356 kb on - strand, within yehW at 2214.491 kb on + strand at 2214.491 kb on + strand at 2214.540 kb on + strand at 2214.540 kb on + strand at 2214.554 kb on - strand at 2214.568 kb on - strand at 2214.700 kb on + strand, within yehX at 2214.708 kb on - strand, within yehX at 2214.965 kb on + strand, within yehX at 2214.997 kb on + strand, within yehX at 2215.044 kb on - strand, within yehX at 2215.044 kb on - strand, within yehX at 2215.187 kb on - strand, within yehX at 2215.394 kb on + strand at 2215.450 kb on + strand at 2215.461 kb on + strand at 2215.683 kb on - strand, within yehY at 2215.683 kb on - strand, within yehY at 2215.698 kb on - strand, within yehY at 2215.698 kb on - strand, within yehY at 2215.701 kb on - strand, within yehY at 2215.805 kb on + strand, within yehY at 2215.876 kb on - strand, within yehY at 2215.909 kb on - strand, within yehY at 2215.909 kb on - strand, within yehY at 2215.998 kb on + strand, within yehY at 2216.025 kb on + strand, within yehY at 2216.025 kb on + strand, within yehY at 2216.209 kb on + strand, within yehY at 2216.209 kb on + strand, within yehY at 2216.217 kb on - strand, within yehY at 2216.217 kb on - strand, within yehY at 2216.355 kb on - strand, within yehY
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 2,213,506 + mlrA b2127 0.84 +0.8 2,213,506 + mlrA b2127 0.84 -0.4 2,213,513 + mlrA b2127 0.85 -0.9 2,213,641 + +2.9 2,213,641 + +0.5 2,213,646 + -0.1 2,213,654 - -0.3 2,213,684 - +1.0 2,213,781 + -0.6 2,213,819 + +0.4 2,213,903 - yehW b2128 0.19 +0.5 2,213,988 - yehW b2128 0.30 +0.2 2,214,022 - yehW b2128 0.35 -0.3 2,214,159 + yehW b2128 0.54 -0.1 2,214,356 - yehW b2128 0.80 +0.3 2,214,356 - yehW b2128 0.80 +0.3 2,214,491 + -0.4 2,214,491 + -0.2 2,214,540 + -1.2 2,214,540 + +0.1 2,214,554 - +0.5 2,214,568 - -0.4 2,214,700 + yehX b2129 0.21 -1.5 2,214,708 - yehX b2129 0.22 -0.6 2,214,965 + yehX b2129 0.50 -0.2 2,214,997 + yehX b2129 0.53 -1.7 2,215,044 - yehX b2129 0.58 -0.3 2,215,044 - yehX b2129 0.58 -1.3 2,215,187 - yehX b2129 0.74 +0.1 2,215,394 + +0.4 2,215,450 + +0.4 2,215,461 + +0.9 2,215,683 - yehY b2130 0.23 +0.2 2,215,683 - yehY b2130 0.23 +1.2 2,215,698 - yehY b2130 0.24 -1.6 2,215,698 - yehY b2130 0.24 +0.6 2,215,701 - yehY b2130 0.24 +0.5 2,215,805 + yehY b2130 0.33 -2.1 2,215,876 - yehY b2130 0.39 -1.2 2,215,909 - yehY b2130 0.42 -0.1 2,215,909 - yehY b2130 0.42 -0.9 2,215,998 + yehY b2130 0.50 +0.0 2,216,025 + yehY b2130 0.52 +0.1 2,216,025 + yehY b2130 0.52 +0.3 2,216,209 + yehY b2130 0.68 +0.4 2,216,209 + yehY b2130 0.68 -0.6 2,216,217 - yehY b2130 0.69 -0.3 2,216,217 - yehY b2130 0.69 -0.2 2,216,355 - yehY b2130 0.81 -0.1
Or see this region's nucleotide sequence