Experiment: L-Fucose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt sapF and sapD are separated by 1 nucleotides sapD and sapC overlap by 1 nucleotides sapC and sapB overlap by 14 nucleotides sapB and sapA overlap by 4 nucleotides
b1290: sapF - predicted antimicrobial peptide transporter subunit (NCBI), at 1,349,852 to 1,350,658
sapF
b1291: sapD - predicted antimicrobial peptide transporter subunit (NCBI), at 1,350,660 to 1,351,652
sapD
b1292: sapC - predicted antimicrobial peptide transporter subunit (NCBI), at 1,351,652 to 1,352,542
sapC
b1293: sapB - predicted antimicrobial peptide transporter subunit (NCBI), at 1,352,529 to 1,353,494
sapB
b1294: sapA - predicted antimicrobial peptide transporter subunit (NCBI), at 1,353,491 to 1,355,134
sapA
Position (kb)
1351
1352
1353 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1350.656 kb on - strand at 1350.749 kb on + strand at 1350.855 kb on + strand, within sapD at 1350.861 kb on + strand, within sapD at 1350.997 kb on - strand, within sapD at 1351.021 kb on - strand, within sapD at 1351.342 kb on - strand, within sapD at 1351.739 kb on - strand at 1352.074 kb on - strand, within sapC at 1352.113 kb on + strand, within sapC at 1352.173 kb on + strand, within sapC at 1352.173 kb on + strand, within sapC at 1352.254 kb on + strand, within sapC at 1352.290 kb on - strand, within sapC at 1352.351 kb on - strand, within sapC at 1352.438 kb on + strand, within sapC at 1352.770 kb on - strand, within sapB at 1352.770 kb on - strand, within sapB at 1352.790 kb on + strand, within sapB at 1353.131 kb on + strand, within sapB at 1353.522 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Fucose (C) remove 1,350,656 - -0.3 1,350,749 + -1.5 1,350,855 + sapD b1291 0.20 +0.1 1,350,861 + sapD b1291 0.20 -2.4 1,350,997 - sapD b1291 0.34 -2.9 1,351,021 - sapD b1291 0.36 -0.0 1,351,342 - sapD b1291 0.69 -1.5 1,351,739 - -0.7 1,352,074 - sapC b1292 0.47 -2.3 1,352,113 + sapC b1292 0.52 -3.2 1,352,173 + sapC b1292 0.58 -2.5 1,352,173 + sapC b1292 0.58 -0.7 1,352,254 + sapC b1292 0.68 -2.0 1,352,290 - sapC b1292 0.72 -0.3 1,352,351 - sapC b1292 0.78 +2.9 1,352,438 + sapC b1292 0.88 -1.5 1,352,770 - sapB b1293 0.25 -1.4 1,352,770 - sapB b1293 0.25 -0.7 1,352,790 + sapB b1293 0.27 -2.4 1,353,131 + sapB b1293 0.62 -2.0 1,353,522 + -0.7
Or see this region's nucleotide sequence