Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4400

Experiment: KB with Berberine 15.6 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4398 and Psyr_4399 are separated by 129 nucleotidesPsyr_4399 and Psyr_4400 are separated by 76 nucleotidesPsyr_4400 and Psyr_4401 are separated by 17 nucleotides Psyr_4398: Psyr_4398 - Protein-disulfide reductase, at 5,259,326 to 5,261,146 _4398 Psyr_4399: Psyr_4399 - 3-dehydroquinate dehydratase, at 5,261,276 to 5,261,728 _4399 Psyr_4400: Psyr_4400 - biotin carboxyl carrier protein, at 5,261,805 to 5,262,266 _4400 Psyr_4401: Psyr_4401 - acetyl-CoA carboxylase carboxyltransferase subunit alpha / biotin carboxylase, at 5,262,284 to 5,263,627 _4401 Position (kb) 5261 5262 5263Strain fitness (log2 ratio) -1 0 1at 5261.261 kb on + strandat 5261.261 kb on + strandat 5261.261 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
remove
5,261,261 + +0.4
5,261,261 + +0.8
5,261,261 + -0.8

Or see this region's nucleotide sequence