Experiment: KB with Berberine 15.6 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4232 and Psyr_4233 are separated by 209 nucleotides Psyr_4233 and Psyr_4234 are separated by 96 nucleotides
Psyr_4232: Psyr_4232 - Protein of unknown function DUF541, at 5,040,331 to 5,041,044
_4232
Psyr_4233: Psyr_4233 - PhcA, at 5,041,254 to 5,042,810
_4233
Psyr_4234: Psyr_4234 - extracellular solute-binding protein, family 5, at 5,042,907 to 5,044,514
_4234
Position (kb) 5041
5042
5043 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5040.317 kb on - strand at 5040.416 kb on - strand, within Psyr_4232 at 5040.416 kb on - strand, within Psyr_4232 at 5040.484 kb on + strand, within Psyr_4232 at 5040.484 kb on + strand, within Psyr_4232 at 5040.485 kb on - strand, within Psyr_4232 at 5040.891 kb on + strand, within Psyr_4232 at 5040.891 kb on + strand, within Psyr_4232 at 5040.892 kb on - strand, within Psyr_4232 at 5040.913 kb on + strand, within Psyr_4232 at 5040.914 kb on - strand, within Psyr_4232 at 5041.023 kb on - strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.125 kb on + strand at 5041.126 kb on - strand at 5041.126 kb on - strand at 5041.126 kb on - strand at 5041.126 kb on - strand at 5041.126 kb on - strand at 5041.379 kb on + strand at 5041.380 kb on - strand at 5041.380 kb on - strand at 5041.380 kb on - strand at 5041.380 kb on - strand at 5041.446 kb on + strand, within Psyr_4233 at 5041.446 kb on + strand, within Psyr_4233 at 5041.446 kb on + strand, within Psyr_4233 at 5041.447 kb on - strand, within Psyr_4233 at 5041.470 kb on + strand, within Psyr_4233 at 5041.795 kb on - strand, within Psyr_4233 at 5041.795 kb on - strand, within Psyr_4233 at 5041.795 kb on - strand, within Psyr_4233 at 5041.862 kb on + strand, within Psyr_4233 at 5042.024 kb on + strand, within Psyr_4233 at 5042.024 kb on + strand, within Psyr_4233 at 5042.043 kb on - strand, within Psyr_4233 at 5042.147 kb on + strand, within Psyr_4233 at 5042.148 kb on - strand, within Psyr_4233 at 5042.196 kb on + strand, within Psyr_4233 at 5042.197 kb on - strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.265 kb on + strand, within Psyr_4233 at 5042.391 kb on - strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.497 kb on + strand, within Psyr_4233 at 5042.498 kb on - strand, within Psyr_4233 at 5042.726 kb on + strand at 5042.808 kb on + strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.809 kb on - strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.814 kb on + strand at 5042.815 kb on - strand at 5042.815 kb on - strand at 5042.815 kb on - strand at 5042.836 kb on - strand at 5042.843 kb on + strand at 5042.854 kb on + strand at 5042.855 kb on - strand at 5042.855 kb on - strand at 5042.855 kb on - strand at 5042.891 kb on - strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.994 kb on + strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5042.995 kb on - strand at 5043.037 kb on - strand at 5043.168 kb on + strand, within Psyr_4234 at 5043.168 kb on + strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.169 kb on - strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.213 kb on + strand, within Psyr_4234 at 5043.303 kb on + strand, within Psyr_4234 at 5043.466 kb on - strand, within Psyr_4234 at 5043.573 kb on + strand, within Psyr_4234 at 5043.573 kb on + strand, within Psyr_4234 at 5043.585 kb on - strand, within Psyr_4234 at 5043.591 kb on + strand, within Psyr_4234 at 5043.592 kb on - strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.789 kb on + strand, within Psyr_4234 at 5043.790 kb on - strand, within Psyr_4234
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml remove 5,040,317 - +0.5 5,040,416 - Psyr_4232 0.12 +0.6 5,040,416 - Psyr_4232 0.12 -0.5 5,040,484 + Psyr_4232 0.21 +1.6 5,040,484 + Psyr_4232 0.21 +1.8 5,040,485 - Psyr_4232 0.22 +0.1 5,040,891 + Psyr_4232 0.78 -0.4 5,040,891 + Psyr_4232 0.78 +1.5 5,040,892 - Psyr_4232 0.79 -0.5 5,040,913 + Psyr_4232 0.82 +0.6 5,040,914 - Psyr_4232 0.82 -0.5 5,041,023 - +1.4 5,041,125 + +0.1 5,041,125 + +0.3 5,041,125 + -0.7 5,041,126 - +0.3 5,041,126 - +0.0 5,041,126 - -0.3 5,041,126 - +0.6 5,041,126 - -0.2 5,041,379 + +1.3 5,041,380 - -0.5 5,041,380 - -0.5 5,041,380 - +1.3 5,041,380 - -0.1 5,041,446 + Psyr_4233 0.12 +0.1 5,041,446 + Psyr_4233 0.12 +0.3 5,041,446 + Psyr_4233 0.12 +0.6 5,041,447 - Psyr_4233 0.12 +0.1 5,041,470 + Psyr_4233 0.14 +0.5 5,041,795 - Psyr_4233 0.35 +1.7 5,041,795 - Psyr_4233 0.35 +1.9 5,041,795 - Psyr_4233 0.35 -0.2 5,041,862 + Psyr_4233 0.39 -0.2 5,042,024 + Psyr_4233 0.49 +0.8 5,042,024 + Psyr_4233 0.49 +0.7 5,042,043 - Psyr_4233 0.51 +0.1 5,042,147 + Psyr_4233 0.57 +0.9 5,042,148 - Psyr_4233 0.57 +0.1 5,042,196 + Psyr_4233 0.61 +1.4 5,042,197 - Psyr_4233 0.61 +0.2 5,042,265 + Psyr_4233 0.65 +1.2 5,042,265 + Psyr_4233 0.65 +0.5 5,042,391 - Psyr_4233 0.73 -0.3 5,042,497 + Psyr_4233 0.80 -0.9 5,042,497 + Psyr_4233 0.80 +1.5 5,042,497 + Psyr_4233 0.80 -0.7 5,042,497 + Psyr_4233 0.80 -1.4 5,042,498 - Psyr_4233 0.80 -0.1 5,042,726 + -0.9 5,042,808 + -0.6 5,042,809 - -1.6 5,042,809 - -1.8 5,042,809 - +1.1 5,042,809 - -1.7 5,042,809 - +1.1 5,042,809 - +0.4 5,042,809 - +1.5 5,042,809 - +0.2 5,042,809 - -0.0 5,042,814 + +0.1 5,042,814 + +0.1 5,042,814 + -0.0 5,042,814 + +0.6 5,042,815 - -0.9 5,042,815 - -0.7 5,042,815 - -0.3 5,042,836 - -0.2 5,042,843 + -0.1 5,042,854 + -0.7 5,042,855 - -0.6 5,042,855 - +0.1 5,042,855 - -0.0 5,042,891 - +0.3 5,042,994 + +1.5 5,042,994 + +1.1 5,042,994 + +0.2 5,042,994 + +0.5 5,042,995 - -1.3 5,042,995 - -0.2 5,042,995 - +0.8 5,042,995 - +0.6 5,042,995 - +0.2 5,042,995 - -0.5 5,042,995 - -1.1 5,043,037 - -0.5 5,043,168 + Psyr_4234 0.16 -0.0 5,043,168 + Psyr_4234 0.16 +0.2 5,043,169 - Psyr_4234 0.16 +0.1 5,043,169 - Psyr_4234 0.16 +0.5 5,043,169 - Psyr_4234 0.16 +0.1 5,043,169 - Psyr_4234 0.16 +0.4 5,043,213 + Psyr_4234 0.19 +1.1 5,043,213 + Psyr_4234 0.19 -2.3 5,043,213 + Psyr_4234 0.19 -0.4 5,043,303 + Psyr_4234 0.25 +0.7 5,043,466 - Psyr_4234 0.35 -0.9 5,043,573 + Psyr_4234 0.41 -0.1 5,043,573 + Psyr_4234 0.41 +0.5 5,043,585 - Psyr_4234 0.42 -0.3 5,043,591 + Psyr_4234 0.43 -0.5 5,043,592 - Psyr_4234 0.43 -0.4 5,043,789 + Psyr_4234 0.55 +0.2 5,043,789 + Psyr_4234 0.55 -0.1 5,043,789 + Psyr_4234 0.55 -1.9 5,043,790 - Psyr_4234 0.55 +0.1
Or see this region's nucleotide sequence