Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3892

Experiment: KB with Berberine 15.6 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 15.6 ug/ml
4,632,535	-				+0.9
4,632,535	-				-1.0
4,632,558	+				-0.1
4,632,558	+				+0.0
4,632,558	+				-1.3
4,632,559	-				+1.6
4,632,570	+				-0.6
4,632,574	+				+0.6
4,632,575	-				+0.2
4,632,575	-				-0.6
4,632,626	+		Psyr_3891	0.12	+0.3
4,632,626	+		Psyr_3891	0.12	+1.0
4,632,627	-		Psyr_3891	0.12	+0.8
4,632,751	-		Psyr_3891	0.36	-0.0
4,632,803	+		Psyr_3891	0.46	+0.3
4,632,804	-		Psyr_3891	0.46	+1.2
4,632,825	+		Psyr_3891	0.50	+0.5
4,632,826	-		Psyr_3891	0.50	+0.3
4,632,858	+		Psyr_3891	0.56	+0.8
4,632,859	-		Psyr_3891	0.56	-0.5
4,632,922	-		Psyr_3891	0.68	+0.3
4,633,025	+		Psyr_3891	0.88	+0.6
4,633,121	+				-0.8
4,633,122	-				-0.8
4,633,125	+				-0.9
4,633,125	+				+0.8
4,633,126	-				+1.0
4,633,126	-				+0.1
4,633,153	-				-0.3
4,633,183	+				-0.2
4,633,204	-				+0.6
4,633,227	-				-1.1
4,633,227	-				-1.2
4,633,304	-				-0.1
4,633,339	+				+1.5
4,633,339	+				+0.3
4,633,339	+				+0.5
4,633,339	+				+1.0
4,633,339	+				+0.2
4,633,339	+				-1.1
4,633,339	+				-1.0
4,633,339	+				-0.2
4,633,340	-				-0.2
4,633,340	-				-0.8
4,633,340	-				-0.3
4,633,340	-				-1.7
4,633,342	-				-0.2
4,633,342	-				+0.7
4,633,342	-				-1.6
4,633,419	+				+0.9
4,633,419	+				+0.2
4,633,422	+				-0.5
4,633,422	+				-1.6
4,633,422	+				-0.0
4,634,804	-				-0.5
4,634,812	+				+1.7
4,634,812	+				+1.3
4,635,001	+		Psyr_3893	0.21	+0.6
4,635,001	+		Psyr_3893	0.21	+0.5
4,635,002	-		Psyr_3893	0.21	+1.3
4,635,288	+		Psyr_3893	0.53	-0.2
4,635,289	-		Psyr_3893	0.53	+1.5
4,635,289	-		Psyr_3893	0.53	+1.0
4,635,289	-		Psyr_3893	0.53	+0.3
4,635,317	-		Psyr_3893	0.56	-0.5
4,635,386	+		Psyr_3893	0.64	+0.5
4,635,386	+		Psyr_3893	0.64	+0.2
4,635,386	+		Psyr_3893	0.64	+1.0
4,635,386	+		Psyr_3893	0.64	-0.9
4,635,387	-		Psyr_3893	0.64	+1.4
4,635,398	+		Psyr_3893	0.65	-1.6
4,635,505	+		Psyr_3893	0.77	+1.3
4,635,505	+		Psyr_3893	0.77	+1.7
4,635,505	+		Psyr_3893	0.77	+0.6
4,635,505	+		Psyr_3893	0.77	-0.3
4,635,505	+		Psyr_3893	0.77	-0.6
4,635,506	-		Psyr_3893	0.77	-0.1
4,635,506	-		Psyr_3893	0.77	+0.1
4,635,506	-		Psyr_3893	0.77	+0.1