Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3442

Experiment: KB with Berberine 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3441 and Psyr_3442 are separated by 0 nucleotidesPsyr_3442 and Psyr_3443 are separated by 6 nucleotidesPsyr_3443 and Psyr_3444 are separated by 25 nucleotides Psyr_3441: Psyr_3441 - Flagellar biosynthetic protein FlhB, at 4,106,062 to 4,107,198 _3441 Psyr_3442: Psyr_3442 - Flagellar biosynthesis protein FliR, at 4,107,199 to 4,107,984 _3442 Psyr_3443: Psyr_3443 - Flagellar biosynthesis protein FliQ, at 4,107,991 to 4,108,260 _3443 Psyr_3444: Psyr_3444 - Flagellar transport protein FliP, at 4,108,286 to 4,109,038 _3444 Position (kb) 4107 4108Strain fitness (log2 ratio) -2 -1 0 1 2at 4106.225 kb on + strand, within Psyr_3441at 4106.225 kb on + strand, within Psyr_3441at 4106.226 kb on - strand, within Psyr_3441at 4106.226 kb on - strand, within Psyr_3441at 4106.226 kb on - strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.228 kb on + strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.229 kb on - strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.232 kb on + strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.233 kb on - strand, within Psyr_3441at 4106.316 kb on + strand, within Psyr_3441at 4106.360 kb on + strand, within Psyr_3441at 4106.360 kb on + strand, within Psyr_3441at 4106.361 kb on - strand, within Psyr_3441at 4106.361 kb on - strand, within Psyr_3441at 4106.361 kb on - strand, within Psyr_3441at 4106.361 kb on - strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.466 kb on + strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.467 kb on - strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.555 kb on + strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.556 kb on - strand, within Psyr_3441at 4106.590 kb on + strand, within Psyr_3441at 4106.591 kb on - strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.966 kb on + strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4106.967 kb on - strand, within Psyr_3441at 4107.258 kb on - strandat 4107.475 kb on - strand, within Psyr_3442at 4107.624 kb on + strand, within Psyr_3442at 4107.694 kb on - strand, within Psyr_3442at 4107.694 kb on - strand, within Psyr_3442at 4107.694 kb on - strand, within Psyr_3442at 4107.842 kb on + strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.843 kb on - strand, within Psyr_3442at 4107.946 kb on - strandat 4107.946 kb on - strandat 4108.011 kb on + strandat 4108.019 kb on + strand, within Psyr_3443at 4108.019 kb on + strand, within Psyr_3443at 4108.020 kb on - strand, within Psyr_3443at 4108.020 kb on - strand, within Psyr_3443at 4108.020 kb on - strand, within Psyr_3443at 4108.020 kb on - strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.034 kb on + strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.035 kb on - strand, within Psyr_3443at 4108.046 kb on - strand, within Psyr_3443at 4108.046 kb on - strand, within Psyr_3443at 4108.277 kb on + strandat 4108.289 kb on + strandat 4108.290 kb on - strandat 4108.403 kb on - strand, within Psyr_3444at 4108.403 kb on - strand, within Psyr_3444at 4108.522 kb on + strand, within Psyr_3444at 4108.522 kb on + strand, within Psyr_3444

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
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4,106,225 + Psyr_3441 0.14 +0.8
4,106,225 + Psyr_3441 0.14 +1.5
4,106,226 - Psyr_3441 0.14 +0.7
4,106,226 - Psyr_3441 0.14 +0.9
4,106,226 - Psyr_3441 0.14 +1.1
4,106,228 + Psyr_3441 0.15 +0.5
4,106,228 + Psyr_3441 0.15 +0.5
4,106,228 + Psyr_3441 0.15 -1.0
4,106,229 - Psyr_3441 0.15 +1.0
4,106,229 - Psyr_3441 0.15 +1.0
4,106,229 - Psyr_3441 0.15 +0.4
4,106,229 - Psyr_3441 0.15 -0.1
4,106,229 - Psyr_3441 0.15 -0.4
4,106,232 + Psyr_3441 0.15 -1.9
4,106,232 + Psyr_3441 0.15 -1.1
4,106,232 + Psyr_3441 0.15 +0.6
4,106,232 + Psyr_3441 0.15 -0.7
4,106,232 + Psyr_3441 0.15 +0.6
4,106,232 + Psyr_3441 0.15 -0.1
4,106,233 - Psyr_3441 0.15 +1.9
4,106,233 - Psyr_3441 0.15 -1.0
4,106,233 - Psyr_3441 0.15 -1.5
4,106,233 - Psyr_3441 0.15 +0.9
4,106,233 - Psyr_3441 0.15 +1.2
4,106,233 - Psyr_3441 0.15 +0.7
4,106,233 - Psyr_3441 0.15 +1.3
4,106,233 - Psyr_3441 0.15 +1.1
4,106,316 + Psyr_3441 0.22 +0.0
4,106,360 + Psyr_3441 0.26 -0.7
4,106,360 + Psyr_3441 0.26 +1.1
4,106,361 - Psyr_3441 0.26 +1.0
4,106,361 - Psyr_3441 0.26 +0.7
4,106,361 - Psyr_3441 0.26 -0.4
4,106,361 - Psyr_3441 0.26 -2.3
4,106,466 + Psyr_3441 0.36 +0.5
4,106,466 + Psyr_3441 0.36 -0.5
4,106,466 + Psyr_3441 0.36 -0.3
4,106,466 + Psyr_3441 0.36 +0.7
4,106,467 - Psyr_3441 0.36 +0.5
4,106,467 - Psyr_3441 0.36 -0.1
4,106,467 - Psyr_3441 0.36 -0.3
4,106,467 - Psyr_3441 0.36 -0.5
4,106,555 + Psyr_3441 0.43 +0.4
4,106,555 + Psyr_3441 0.43 -0.2
4,106,555 + Psyr_3441 0.43 -0.5
4,106,555 + Psyr_3441 0.43 +0.3
4,106,555 + Psyr_3441 0.43 +0.2
4,106,555 + Psyr_3441 0.43 -0.1
4,106,555 + Psyr_3441 0.43 +1.0
4,106,555 + Psyr_3441 0.43 -0.8
4,106,555 + Psyr_3441 0.43 -0.3
4,106,555 + Psyr_3441 0.43 +0.5
4,106,555 + Psyr_3441 0.43 -0.7
4,106,555 + Psyr_3441 0.43 +1.4
4,106,555 + Psyr_3441 0.43 +0.3
4,106,555 + Psyr_3441 0.43 +0.3
4,106,556 - Psyr_3441 0.43 -0.0
4,106,556 - Psyr_3441 0.43 +0.4
4,106,556 - Psyr_3441 0.43 -0.1
4,106,556 - Psyr_3441 0.43 +0.1
4,106,556 - Psyr_3441 0.43 +1.5
4,106,556 - Psyr_3441 0.43 +0.2
4,106,590 + Psyr_3441 0.46 +0.6
4,106,591 - Psyr_3441 0.47 +1.9
4,106,966 + Psyr_3441 0.80 +0.9
4,106,966 + Psyr_3441 0.80 -0.2
4,106,966 + Psyr_3441 0.80 -2.0
4,106,966 + Psyr_3441 0.80 +0.5
4,106,966 + Psyr_3441 0.80 +0.1
4,106,966 + Psyr_3441 0.80 +1.9
4,106,966 + Psyr_3441 0.80 +0.2
4,106,966 + Psyr_3441 0.80 +0.4
4,106,966 + Psyr_3441 0.80 -0.5
4,106,966 + Psyr_3441 0.80 -0.9
4,106,966 + Psyr_3441 0.80 +1.5
4,106,967 - Psyr_3441 0.80 +0.2
4,106,967 - Psyr_3441 0.80 +0.3
4,106,967 - Psyr_3441 0.80 +0.2
4,106,967 - Psyr_3441 0.80 +0.4
4,106,967 - Psyr_3441 0.80 +0.8
4,106,967 - Psyr_3441 0.80 +1.9
4,107,258 - -1.5
4,107,475 - Psyr_3442 0.35 +0.4
4,107,624 + Psyr_3442 0.54 +0.9
4,107,694 - Psyr_3442 0.63 +1.0
4,107,694 - Psyr_3442 0.63 +0.4
4,107,694 - Psyr_3442 0.63 +1.2
4,107,842 + Psyr_3442 0.82 +0.2
4,107,843 - Psyr_3442 0.82 +0.7
4,107,843 - Psyr_3442 0.82 +0.2
4,107,843 - Psyr_3442 0.82 +0.9
4,107,843 - Psyr_3442 0.82 +1.0
4,107,946 - +0.3
4,107,946 - -0.4
4,108,011 + +0.0
4,108,019 + Psyr_3443 0.10 -0.1
4,108,019 + Psyr_3443 0.10 +0.6
4,108,020 - Psyr_3443 0.11 +0.7
4,108,020 - Psyr_3443 0.11 +1.1
4,108,020 - Psyr_3443 0.11 +0.2
4,108,020 - Psyr_3443 0.11 -0.5
4,108,034 + Psyr_3443 0.16 +2.2
4,108,034 + Psyr_3443 0.16 +0.2
4,108,034 + Psyr_3443 0.16 -1.1
4,108,035 - Psyr_3443 0.16 +0.5
4,108,035 - Psyr_3443 0.16 +1.7
4,108,035 - Psyr_3443 0.16 -1.6
4,108,035 - Psyr_3443 0.16 +0.1
4,108,035 - Psyr_3443 0.16 -0.7
4,108,035 - Psyr_3443 0.16 -1.1
4,108,035 - Psyr_3443 0.16 -0.7
4,108,035 - Psyr_3443 0.16 +0.3
4,108,035 - Psyr_3443 0.16 +0.9
4,108,035 - Psyr_3443 0.16 -0.1
4,108,035 - Psyr_3443 0.16 +0.5
4,108,046 - Psyr_3443 0.20 -0.1
4,108,046 - Psyr_3443 0.20 +0.5
4,108,277 + +0.1
4,108,289 + +0.6
4,108,290 - +1.1
4,108,403 - Psyr_3444 0.16 +0.3
4,108,403 - Psyr_3444 0.16 +1.2
4,108,522 + Psyr_3444 0.31 -0.3
4,108,522 + Psyr_3444 0.31 +0.6

Or see this region's nucleotide sequence