Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3023

Experiment: KB with Berberine 15.6 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Berberine 15.6 ug/ml
3,620,415	+				-0.5
3,620,415	+				+0.2
3,620,423	-				+0.9
3,620,423	-				+0.9
3,620,424	+				-0.3
3,620,424	+				+0.2
3,620,424	+				-0.1
3,620,425	-				-0.1
3,620,425	-				+0.7
3,620,425	-				+0.4
3,620,425	-				+0.0
3,620,574	+				-0.3
3,620,787	+				+0.1
3,620,842	+				+0.6
3,620,843	-				+0.2
3,620,905	+				+0.5
3,620,905	+				-0.4
3,620,905	+				-0.5
3,620,906	-				-0.8
3,620,906	-				-0.7
3,620,933	+				+0.7
3,620,934	-				+0.9
3,620,934	-				-0.0
3,621,033	-		Psyr_3023	0.22	-0.5
3,621,033	-		Psyr_3023	0.22	+1.9
3,621,033	-		Psyr_3023	0.22	-0.3
3,621,033	-		Psyr_3023	0.22	-0.1
3,621,033	-		Psyr_3023	0.22	+0.4
3,621,064	+		Psyr_3023	0.28	+0.0
3,621,064	+		Psyr_3023	0.28	-1.0
3,621,214	+		Psyr_3023	0.55	+0.1
3,621,215	-		Psyr_3023	0.55	+1.5
3,621,215	-		Psyr_3023	0.55	+0.9
3,621,215	-		Psyr_3023	0.55	-0.1
3,621,394	+		Psyr_3023	0.88	+1.1
3,621,395	-		Psyr_3023	0.88	-0.7
3,621,491	-				+0.0
3,621,519	+				+2.5
3,621,520	-				+1.6
3,621,520	-				+0.7
3,621,520	-				-0.2
3,621,520	-				-0.4
3,621,544	+				-0.0
3,621,545	-				-1.2
3,621,545	-				+0.7
3,621,559	+				-0.6
3,621,559	+				+1.1
3,621,560	-				-1.4
3,621,560	-				-0.0
3,621,560	-				+0.3
3,621,560	-				+0.1
3,621,560	-				+0.3
3,621,723	-		Psyr_3024	0.14	-0.7
3,621,780	-		Psyr_3024	0.19	-0.3
3,621,906	-		Psyr_3024	0.30	-0.6
3,622,001	-		Psyr_3024	0.39	+0.5
3,622,173	-		Psyr_3024	0.54	-0.1
3,622,367	+		Psyr_3024	0.71	-0.8
3,622,371	+		Psyr_3024	0.71	-1.7
3,622,371	+		Psyr_3024	0.71	-0.9
3,622,372	-		Psyr_3024	0.71	-1.0
3,622,372	-		Psyr_3024	0.71	-0.7
3,622,372	-		Psyr_3024	0.71	-0.7
3,622,372	-		Psyr_3024	0.71	+0.2
3,622,403	+		Psyr_3024	0.74	-0.0