Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1103

Experiment: KB with Berberine 15.6 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1102 and Psyr_1103 are separated by 98 nucleotidesPsyr_1103 and Psyr_1104 overlap by 4 nucleotidesPsyr_1104 and Psyr_1105 are separated by 116 nucleotides Psyr_1102: Psyr_1102 - conserved hypothetical protein, at 1,248,790 to 1,249,146 _1102 Psyr_1103: Psyr_1103 - Protein of unknown function DUF454, at 1,249,245 to 1,249,703 _1103 Psyr_1104: Psyr_1104 - Heme oxygenase, at 1,249,700 to 1,250,314 _1104 Psyr_1105: Psyr_1105 - TonB-dependent hemoglobin/transferrin/lactoferrin receptor:TonB-dependent heme/hemoglobin receptor, at 1,250,431 to 1,253,010 _1105 Position (kb) 1249 1250Strain fitness (log2 ratio) -2 -1 0 1 2at 1248.399 kb on + strandat 1248.458 kb on - strandat 1248.506 kb on + strandat 1248.696 kb on + strandat 1248.869 kb on + strand, within Psyr_1102at 1248.869 kb on + strand, within Psyr_1102at 1248.870 kb on - strand, within Psyr_1102at 1249.068 kb on - strand, within Psyr_1102at 1249.068 kb on - strand, within Psyr_1102at 1249.085 kb on + strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.086 kb on - strand, within Psyr_1102at 1249.142 kb on + strandat 1249.142 kb on + strandat 1249.143 kb on - strandat 1249.143 kb on - strandat 1249.143 kb on - strandat 1249.255 kb on - strandat 1249.255 kb on - strandat 1249.255 kb on - strandat 1249.287 kb on + strandat 1249.287 kb on + strandat 1249.287 kb on + strandat 1249.287 kb on + strandat 1249.288 kb on - strandat 1249.321 kb on + strand, within Psyr_1103at 1249.322 kb on - strand, within Psyr_1103at 1249.322 kb on - strand, within Psyr_1103at 1249.435 kb on + strand, within Psyr_1103at 1249.435 kb on + strand, within Psyr_1103at 1249.435 kb on + strand, within Psyr_1103at 1249.435 kb on + strand, within Psyr_1103at 1249.435 kb on + strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.436 kb on - strand, within Psyr_1103at 1249.569 kb on + strand, within Psyr_1103at 1249.602 kb on + strand, within Psyr_1103at 1249.602 kb on + strand, within Psyr_1103at 1249.602 kb on + strand, within Psyr_1103at 1249.602 kb on + strand, within Psyr_1103at 1249.602 kb on + strand, within Psyr_1103at 1249.603 kb on - strand, within Psyr_1103at 1249.603 kb on - strand, within Psyr_1103at 1249.603 kb on - strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.636 kb on + strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1249.637 kb on - strand, within Psyr_1103at 1250.136 kb on + strand, within Psyr_1104at 1250.136 kb on + strand, within Psyr_1104at 1250.166 kb on + strand, within Psyr_1104at 1250.190 kb on + strand, within Psyr_1104at 1250.191 kb on - strand, within Psyr_1104at 1250.317 kb on + strandat 1250.349 kb on + strandat 1250.375 kb on + strandat 1250.507 kb on - strandat 1250.579 kb on + strandat 1250.579 kb on + strandat 1250.579 kb on + strandat 1250.579 kb on + strandat 1250.580 kb on - strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.618 kb on + strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strandat 1250.619 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Berberine 15.6 ug/ml
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1,248,399 + +0.3
1,248,458 - +1.2
1,248,506 + +0.5
1,248,696 + -0.2
1,248,869 + Psyr_1102 0.22 +0.2
1,248,869 + Psyr_1102 0.22 +0.6
1,248,870 - Psyr_1102 0.22 +0.9
1,249,068 - Psyr_1102 0.78 +0.8
1,249,068 - Psyr_1102 0.78 -2.0
1,249,085 + Psyr_1102 0.83 +0.7
1,249,086 - Psyr_1102 0.83 -0.6
1,249,086 - Psyr_1102 0.83 -1.8
1,249,086 - Psyr_1102 0.83 +0.8
1,249,086 - Psyr_1102 0.83 -0.8
1,249,086 - Psyr_1102 0.83 -0.3
1,249,086 - Psyr_1102 0.83 -0.7
1,249,142 + +0.1
1,249,142 + -0.3
1,249,143 - +1.6
1,249,143 - -0.3
1,249,143 - +1.0
1,249,255 - +0.4
1,249,255 - -0.2
1,249,255 - +0.7
1,249,287 + -0.3
1,249,287 + +1.0
1,249,287 + +0.1
1,249,287 + +1.0
1,249,288 - +0.7
1,249,321 + Psyr_1103 0.17 -0.0
1,249,322 - Psyr_1103 0.17 -0.8
1,249,322 - Psyr_1103 0.17 -0.8
1,249,435 + Psyr_1103 0.41 +0.1
1,249,435 + Psyr_1103 0.41 +0.6
1,249,435 + Psyr_1103 0.41 -0.6
1,249,435 + Psyr_1103 0.41 +0.4
1,249,435 + Psyr_1103 0.41 -0.0
1,249,436 - Psyr_1103 0.42 +2.6
1,249,436 - Psyr_1103 0.42 +0.2
1,249,436 - Psyr_1103 0.42 +0.7
1,249,436 - Psyr_1103 0.42 -0.3
1,249,569 + Psyr_1103 0.71 -0.8
1,249,602 + Psyr_1103 0.78 -0.3
1,249,602 + Psyr_1103 0.78 +0.7
1,249,602 + Psyr_1103 0.78 +0.4
1,249,602 + Psyr_1103 0.78 -1.3
1,249,602 + Psyr_1103 0.78 +0.2
1,249,603 - Psyr_1103 0.78 +0.4
1,249,603 - Psyr_1103 0.78 -1.0
1,249,603 - Psyr_1103 0.78 -0.0
1,249,636 + Psyr_1103 0.85 +0.1
1,249,636 + Psyr_1103 0.85 +1.0
1,249,636 + Psyr_1103 0.85 +0.3
1,249,636 + Psyr_1103 0.85 -0.9
1,249,636 + Psyr_1103 0.85 +0.6
1,249,636 + Psyr_1103 0.85 -1.0
1,249,636 + Psyr_1103 0.85 -1.8
1,249,637 - Psyr_1103 0.85 -0.0
1,249,637 - Psyr_1103 0.85 -1.3
1,250,136 + Psyr_1104 0.71 +0.6
1,250,136 + Psyr_1104 0.71 +1.4
1,250,166 + Psyr_1104 0.76 +1.3
1,250,190 + Psyr_1104 0.80 +1.1
1,250,191 - Psyr_1104 0.80 -0.2
1,250,317 + +0.4
1,250,349 + -2.0
1,250,375 + +1.0
1,250,507 - -0.3
1,250,579 + -1.2
1,250,579 + +1.4
1,250,579 + -2.0
1,250,579 + -0.6
1,250,580 - +0.5
1,250,618 + +0.5
1,250,618 + -0.0
1,250,618 + +0.4
1,250,618 + -0.6
1,250,618 + +0.3
1,250,618 + -0.1
1,250,618 + +1.2
1,250,619 - -0.6
1,250,619 - +1.7
1,250,619 - +0.8
1,250,619 - +0.0
1,250,619 - +0.3
1,250,619 - -0.1
1,250,619 - -1.9

Or see this region's nucleotide sequence